Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23545 and BPHYT_RS23550 overlap by 4 nucleotides BPHYT_RS23550 and BPHYT_RS23555 are separated by 15 nucleotides
BPHYT_RS23545: BPHYT_RS23545 - nodulation protein, at 849,238 to 852,558
_RS23545
BPHYT_RS23550: BPHYT_RS23550 - multidrug transporter, at 852,555 to 855,680
_RS23550
BPHYT_RS23555: BPHYT_RS23555 - multidrug transporter, at 855,696 to 856,925
_RS23555
Position (kb) 852
853
854
855
856 Strain fitness (log2 ratio) -1
0
1
2 at 851.879 kb on + strand, within BPHYT_RS23545 at 851.879 kb on + strand, within BPHYT_RS23545 at 852.306 kb on - strand at 852.474 kb on - strand at 852.647 kb on - strand at 853.040 kb on - strand, within BPHYT_RS23550 at 853.040 kb on - strand, within BPHYT_RS23550 at 853.099 kb on + strand, within BPHYT_RS23550 at 853.639 kb on + strand, within BPHYT_RS23550 at 853.639 kb on + strand, within BPHYT_RS23550 at 853.639 kb on + strand, within BPHYT_RS23550 at 853.639 kb on + strand, within BPHYT_RS23550 at 853.684 kb on + strand, within BPHYT_RS23550 at 853.738 kb on + strand, within BPHYT_RS23550 at 854.134 kb on + strand, within BPHYT_RS23550 at 855.091 kb on + strand, within BPHYT_RS23550 at 855.529 kb on + strand at 855.697 kb on + strand at 855.698 kb on - strand at 855.740 kb on + strand at 855.930 kb on - strand, within BPHYT_RS23555 at 855.930 kb on - strand, within BPHYT_RS23555 at 855.949 kb on + strand, within BPHYT_RS23555 at 855.950 kb on - strand, within BPHYT_RS23555 at 856.318 kb on + strand, within BPHYT_RS23555 at 856.318 kb on + strand, within BPHYT_RS23555 at 856.319 kb on - strand, within BPHYT_RS23555 at 856.471 kb on + strand, within BPHYT_RS23555 at 856.493 kb on + strand, within BPHYT_RS23555
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 851,879 + BPHYT_RS23545 0.80 +0.3 851,879 + BPHYT_RS23545 0.80 +0.5 852,306 - -1.1 852,474 - +0.3 852,647 - +0.6 853,040 - BPHYT_RS23550 0.16 -0.7 853,040 - BPHYT_RS23550 0.16 +0.8 853,099 + BPHYT_RS23550 0.17 +0.4 853,639 + BPHYT_RS23550 0.35 +0.1 853,639 + BPHYT_RS23550 0.35 -0.2 853,639 + BPHYT_RS23550 0.35 -0.8 853,639 + BPHYT_RS23550 0.35 +0.8 853,684 + BPHYT_RS23550 0.36 -0.1 853,738 + BPHYT_RS23550 0.38 +1.3 854,134 + BPHYT_RS23550 0.51 -0.6 855,091 + BPHYT_RS23550 0.81 +0.2 855,529 + +1.2 855,697 + +0.8 855,698 - -1.3 855,740 + +0.4 855,930 - BPHYT_RS23555 0.19 +1.4 855,930 - BPHYT_RS23555 0.19 -0.2 855,949 + BPHYT_RS23555 0.21 +0.2 855,950 - BPHYT_RS23555 0.21 +1.7 856,318 + BPHYT_RS23555 0.51 +0.5 856,318 + BPHYT_RS23555 0.51 +1.6 856,319 - BPHYT_RS23555 0.51 +1.8 856,471 + BPHYT_RS23555 0.63 +2.6 856,493 + BPHYT_RS23555 0.65 -0.2
Or see this region's nucleotide sequence