Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20380 and BPHYT_RS20385 are separated by 109 nucleotides BPHYT_RS20385 and BPHYT_RS20390 are separated by 78 nucleotides BPHYT_RS20390 and BPHYT_RS20395 are separated by 80 nucleotides
BPHYT_RS20380: BPHYT_RS20380 - LysR family transcriptional regulator, at 135,141 to 136,067
_RS20380
BPHYT_RS20385: BPHYT_RS20385 - TetR family transcriptional regulator, at 136,177 to 136,761
_RS20385
BPHYT_RS20390: BPHYT_RS20390 - oxidoreductase, at 136,840 to 137,961
_RS20390
BPHYT_RS20395: BPHYT_RS20395 - short-chain dehydrogenase, at 138,042 to 138,788
_RS20395
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 136.011 kb on - strand at 136.125 kb on - strand at 136.208 kb on - strand at 136.208 kb on - strand at 136.358 kb on + strand, within BPHYT_RS20385 at 136.360 kb on + strand, within BPHYT_RS20385 at 136.360 kb on + strand, within BPHYT_RS20385 at 136.360 kb on + strand, within BPHYT_RS20385 at 136.360 kb on + strand, within BPHYT_RS20385 at 136.361 kb on - strand, within BPHYT_RS20385 at 136.505 kb on + strand, within BPHYT_RS20385 at 136.583 kb on + strand, within BPHYT_RS20385 at 136.782 kb on + strand at 136.855 kb on - strand at 137.030 kb on + strand, within BPHYT_RS20390 at 137.387 kb on + strand, within BPHYT_RS20390 at 137.388 kb on - strand, within BPHYT_RS20390 at 137.404 kb on - strand, within BPHYT_RS20390 at 137.463 kb on - strand, within BPHYT_RS20390 at 137.486 kb on - strand, within BPHYT_RS20390 at 137.507 kb on + strand, within BPHYT_RS20390 at 137.508 kb on - strand, within BPHYT_RS20390 at 137.777 kb on + strand, within BPHYT_RS20390 at 137.778 kb on - strand, within BPHYT_RS20390 at 137.876 kb on - strand at 137.876 kb on - strand at 138.043 kb on + strand at 138.044 kb on - strand at 138.289 kb on + strand, within BPHYT_RS20395 at 138.290 kb on - strand, within BPHYT_RS20395 at 138.337 kb on + strand, within BPHYT_RS20395 at 138.338 kb on - strand, within BPHYT_RS20395 at 138.633 kb on + strand, within BPHYT_RS20395 at 138.633 kb on + strand, within BPHYT_RS20395 at 138.634 kb on - strand, within BPHYT_RS20395 at 138.634 kb on - strand, within BPHYT_RS20395 at 138.768 kb on - strand at 138.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 136,011 - +0.6 136,125 - +0.4 136,208 - -0.4 136,208 - -0.7 136,358 + BPHYT_RS20385 0.31 -0.1 136,360 + BPHYT_RS20385 0.31 +0.1 136,360 + BPHYT_RS20385 0.31 -0.7 136,360 + BPHYT_RS20385 0.31 +0.6 136,360 + BPHYT_RS20385 0.31 +0.4 136,361 - BPHYT_RS20385 0.31 -1.4 136,505 + BPHYT_RS20385 0.56 +1.0 136,583 + BPHYT_RS20385 0.69 -0.4 136,782 + +0.1 136,855 - +0.3 137,030 + BPHYT_RS20390 0.17 +0.0 137,387 + BPHYT_RS20390 0.49 -1.0 137,388 - BPHYT_RS20390 0.49 +0.4 137,404 - BPHYT_RS20390 0.50 -0.3 137,463 - BPHYT_RS20390 0.56 +0.6 137,486 - BPHYT_RS20390 0.58 -0.3 137,507 + BPHYT_RS20390 0.59 -0.3 137,508 - BPHYT_RS20390 0.60 +0.0 137,777 + BPHYT_RS20390 0.84 +0.2 137,778 - BPHYT_RS20390 0.84 -2.0 137,876 - +1.0 137,876 - -0.0 138,043 + +0.2 138,044 - +0.2 138,289 + BPHYT_RS20395 0.33 -0.0 138,290 - BPHYT_RS20395 0.33 -1.3 138,337 + BPHYT_RS20395 0.39 -0.6 138,338 - BPHYT_RS20395 0.40 -0.6 138,633 + BPHYT_RS20395 0.79 +2.1 138,633 + BPHYT_RS20395 0.79 +0.0 138,634 - BPHYT_RS20395 0.79 +1.4 138,634 - BPHYT_RS20395 0.79 +1.6 138,768 - -2.1 138,768 - +0.4
Or see this region's nucleotide sequence