Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17540

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
3,970,372	+				+1.1
3,970,372	+				+0.1
3,970,372	+				+0.7
3,970,372	+				-0.6
3,970,372	+				-1.2
3,970,372	+				+0.2
3,970,372	+				+0.7
3,970,373	-				+2.1
3,970,373	-				+0.4
3,970,373	-				-0.5
3,970,373	-				-0.9
3,970,373	-				-0.4
3,970,373	-				+0.6
3,970,374	+				+0.1
3,970,375	-				+0.8
3,970,375	-				+0.1
3,970,381	-				-0.3
3,970,393	+				+0.1
3,970,393	+				-1.5
3,970,393	+				-0.5
3,970,394	-				-0.1
3,970,394	-				+0.4
3,970,439	-				-2.1
3,970,647	+		BPHYT_RS17535	0.28	-0.4
3,970,659	+		BPHYT_RS17535	0.29	+0.3
3,970,660	-		BPHYT_RS17535	0.30	+0.8
3,970,660	-		BPHYT_RS17535	0.30	-0.0
3,970,801	+		BPHYT_RS17535	0.47	+0.2
3,970,801	+		BPHYT_RS17535	0.47	+1.1
3,971,136	+				-0.4
3,971,166	+				+0.4
3,971,166	+				-0.5
3,971,166	+				-0.0
3,971,167	-				+0.7
3,971,167	-				-0.3
3,971,193	+				-0.1
3,971,194	-				+0.1
3,971,194	-				-0.2
3,971,194	-				-0.2
3,971,194	-				+1.1
3,971,198	-				-0.4
3,971,198	-				+0.3
3,971,198	-				+0.1
3,971,211	+				-1.4
3,971,225	-				+0.4
3,971,233	+				+0.6
3,971,234	-				-0.5
3,971,234	-				+0.7
3,971,302	+				+0.9
3,971,392	+				-0.1
3,971,392	+				-1.9
3,971,392	+				-0.3
3,971,393	-				-0.8
3,971,393	-				-0.2
3,971,393	-				-0.2
3,971,393	-				-0.7
3,971,507	-		BPHYT_RS17540	0.13	+0.7
3,971,507	-		BPHYT_RS17540	0.13	-1.1
3,971,575	+		BPHYT_RS17540	0.17	-0.4
3,971,645	-		BPHYT_RS17540	0.22	-0.8
3,971,944	+		BPHYT_RS17540	0.40	-0.7
3,971,971	+		BPHYT_RS17540	0.42	-0.7
3,971,971	+		BPHYT_RS17540	0.42	+0.5
3,971,971	+		BPHYT_RS17540	0.42	-1.9
3,971,972	-		BPHYT_RS17540	0.42	-0.6
3,972,013	+		BPHYT_RS17540	0.45	-1.1
3,972,014	-		BPHYT_RS17540	0.45	-0.5
3,972,014	-		BPHYT_RS17540	0.45	+0.4
3,972,130	+		BPHYT_RS17540	0.52	-0.3
3,972,130	+		BPHYT_RS17540	0.52	-1.1
3,972,130	+		BPHYT_RS17540	0.52	-0.5
3,972,131	-		BPHYT_RS17540	0.52	-1.1
3,972,151	+		BPHYT_RS17540	0.53	-0.5
3,972,151	+		BPHYT_RS17540	0.53	+0.8
3,972,151	+		BPHYT_RS17540	0.53	-0.7
3,972,152	-		BPHYT_RS17540	0.53	-1.0
3,972,152	-		BPHYT_RS17540	0.53	-0.2
3,972,452	-		BPHYT_RS17540	0.72	-0.0
3,972,452	-		BPHYT_RS17540	0.72	-1.5
3,972,452	-		BPHYT_RS17540	0.72	-0.9
3,972,466	+		BPHYT_RS17540	0.73	-2.1
3,972,467	-		BPHYT_RS17540	0.73	-1.5
3,972,496	-		BPHYT_RS17540	0.75	-0.2
3,972,548	-		BPHYT_RS17540	0.78	-1.4
3,972,548	-		BPHYT_RS17540	0.78	+2.1
3,972,557	+		BPHYT_RS17540	0.79	-0.9
3,972,557	+		BPHYT_RS17540	0.79	+1.1
3,972,558	-		BPHYT_RS17540	0.79	-0.6
3,972,558	-		BPHYT_RS17540	0.79	+0.1
3,972,558	-		BPHYT_RS17540	0.79	-0.9
3,972,558	-		BPHYT_RS17540	0.79	-1.1
3,972,558	-		BPHYT_RS17540	0.79	-0.9
3,972,558	-		BPHYT_RS17540	0.79	-1.5
3,972,558	-		BPHYT_RS17540	0.79	-0.4
3,972,558	-		BPHYT_RS17540	0.79	-1.3
3,972,558	-		BPHYT_RS17540	0.79	-0.3
3,972,563	+		BPHYT_RS17540	0.79	-0.1
3,972,563	+		BPHYT_RS17540	0.79	-1.5
3,972,563	+		BPHYT_RS17540	0.79	-0.9
3,972,563	+		BPHYT_RS17540	0.79	-1.1
3,972,564	-		BPHYT_RS17540	0.79	+0.1
3,972,564	-		BPHYT_RS17540	0.79	-1.5
3,972,564	-		BPHYT_RS17540	0.79	-1.4
3,972,564	-		BPHYT_RS17540	0.79	-0.8
3,972,565	+		BPHYT_RS17540	0.79	-1.1
3,972,565	+		BPHYT_RS17540	0.79	-0.2
3,972,565	+		BPHYT_RS17540	0.79	-1.3
3,972,565	+		BPHYT_RS17540	0.79	-0.5
3,972,565	+		BPHYT_RS17540	0.79	-1.2
3,972,565	+		BPHYT_RS17540	0.79	-1.1
3,972,566	-		BPHYT_RS17540	0.79	-0.7
3,972,566	-		BPHYT_RS17540	0.79	-2.4
3,972,566	-		BPHYT_RS17540	0.79	-0.6
3,972,566	-		BPHYT_RS17540	0.79	-2.4
3,972,566	-		BPHYT_RS17540	0.79	+1.1
3,972,566	-		BPHYT_RS17540	0.79	-1.1
3,972,719	-		BPHYT_RS17540	0.89	-1.7
3,972,840	+				-3.1
3,972,841	-				-1.0
3,972,841	-				-0.4
3,972,841	-				-0.7
3,972,882	+				+0.2
3,972,882	+				-0.8
3,972,883	-				-0.4
3,972,883	-				-0.5
3,972,883	-				-1.5
3,972,883	-				-1.5
3,972,885	-				+0.5
3,972,885	-				+0.1
3,972,885	-				-0.0
3,972,885	-				-0.1
3,973,023	-				+1.1
3,973,023	-				+0.2
3,973,023	-				+0.2
3,973,118	-				+0.1
3,973,137	+				+1.6
3,973,138	-				+1.1
3,973,149	+				+0.2
3,973,225	+				+0.0
3,973,225	+				+0.6
3,973,226	-				+0.1
3,973,228	-				+0.4
3,973,273	-				-0.1
3,973,351	+				+1.1
3,973,351	+				+0.6
3,973,355	+				+0.1
3,973,355	+				+0.3
3,973,355	+				+0.4
3,973,356	-				-0.8
3,973,356	-				-0.6
3,973,356	-				+0.8
3,973,374	+				+0.0
3,973,374	+				+1.3
3,973,374	+				+0.5
3,973,374	+				+0.4
3,973,375	-				+0.7
3,973,375	-				-0.3
3,973,375	-				-1.1
3,973,375	-				-0.5
3,973,375	-				-1.5
3,973,377	+				+0.7
3,973,521	+		BPHYT_RS17545	0.70	-0.2
3,973,563	+				+1.6
3,973,563	+				-0.8
3,973,564	-				-0.9
3,973,637	-				+2.1
3,973,662	+				+0.5
3,973,674	-				+2.1
3,973,674	-				-0.9
3,973,760	-				+2.4
3,973,767	+				+0.1
3,973,768	-				-0.9
3,973,801	+				+0.1
3,973,835	+		BPHYT_RS17550	0.11	-0.9