Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15870 and BPHYT_RS15875 overlap by 20 nucleotides BPHYT_RS15875 and BPHYT_RS15880 are separated by 149 nucleotides BPHYT_RS15880 and BPHYT_RS15885 are separated by 208 nucleotides
BPHYT_RS15870: BPHYT_RS15870 - tetraacyldisaccharide 4'-kinase, at 3,604,483 to 3,605,499
_RS15870
BPHYT_RS15875: BPHYT_RS15875 - hypothetical protein, at 3,605,480 to 3,605,683
_RS15875
BPHYT_RS15880: BPHYT_RS15880 - 3-deoxy-manno-octulosonate cytidylyltransferase 1, at 3,605,833 to 3,606,633
_RS15880
BPHYT_RS15885: BPHYT_RS15885 - adenylate kinase, at 3,606,842 to 3,607,507
_RS15885
Position (kb) 3605
3606
3607 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3605.462 kb on + strand at 3605.462 kb on + strand at 3605.462 kb on + strand at 3606.620 kb on + strand at 3606.820 kb on + strand at 3606.820 kb on + strand at 3606.824 kb on + strand at 3606.824 kb on + strand at 3607.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 3,605,462 + -2.3 3,605,462 + -0.6 3,605,462 + -2.1 3,606,620 + -0.4 3,606,820 + +2.4 3,606,820 + +0.0 3,606,824 + +0.1 3,606,824 + -0.3 3,607,505 + +0.6
Or see this region's nucleotide sequence