Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13880

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS13875 and BPHYT_RS13880 are separated by 788 nucleotidesBPHYT_RS13880 and BPHYT_RS13885 overlap by 1 nucleotides BPHYT_RS13875: BPHYT_RS13875 - transposase, at 3,167,580 to 3,167,882 _RS13875 BPHYT_RS13880: BPHYT_RS13880 - oxidoreductase, at 3,168,671 to 3,169,720 _RS13880 BPHYT_RS13885: BPHYT_RS13885 - myo-inositol 2-dehydrogenase, at 3,169,720 to 3,170,736 _RS13885 Position (kb) 3168 3169 3170Strain fitness (log2 ratio) -2 -1 0 1at 3169.818 kb on + strandat 3169.818 kb on + strandat 3169.874 kb on + strand, within BPHYT_RS13885at 3169.875 kb on - strand, within BPHYT_RS13885

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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3,169,818 + -1.8
3,169,818 + -1.8
3,169,874 + BPHYT_RS13885 0.15 -2.1
3,169,875 - BPHYT_RS13885 0.15 -0.9

Or see this region's nucleotide sequence