Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04200 and BPHYT_RS04205 are separated by 174 nucleotides BPHYT_RS04205 and BPHYT_RS04210 are separated by 289 nucleotides BPHYT_RS04210 and BPHYT_RS04215 are separated by 255 nucleotides
BPHYT_RS04200: BPHYT_RS04200 - molecular chaperone GroEL, at 962,931 to 964,571
_RS04200
BPHYT_RS04205: BPHYT_RS04205 - kinase, at 964,746 to 965,606
_RS04205
BPHYT_RS04210: BPHYT_RS04210 - rubredoxin, at 965,896 to 966,066
_RS04210
BPHYT_RS04215: BPHYT_RS04215 - hypothetical protein, at 966,322 to 967,734
_RS04215
Position (kb) 964
965
966 Strain fitness (log2 ratio) -2
-1
0
1 at 964.744 kb on + strand at 964.838 kb on + strand, within BPHYT_RS04205 at 964.840 kb on + strand, within BPHYT_RS04205 at 964.841 kb on - strand, within BPHYT_RS04205 at 964.841 kb on - strand, within BPHYT_RS04205 at 964.841 kb on - strand, within BPHYT_RS04205 at 964.841 kb on - strand, within BPHYT_RS04205 at 964.888 kb on + strand, within BPHYT_RS04205 at 964.888 kb on + strand, within BPHYT_RS04205 at 964.889 kb on - strand, within BPHYT_RS04205 at 964.889 kb on - strand, within BPHYT_RS04205 at 964.889 kb on - strand, within BPHYT_RS04205 at 964.964 kb on + strand, within BPHYT_RS04205 at 964.964 kb on + strand, within BPHYT_RS04205 at 965.042 kb on + strand, within BPHYT_RS04205 at 965.042 kb on + strand, within BPHYT_RS04205 at 965.042 kb on + strand, within BPHYT_RS04205 at 965.083 kb on + strand, within BPHYT_RS04205 at 965.663 kb on + strand at 965.663 kb on + strand at 965.664 kb on - strand at 965.805 kb on - strand at 965.879 kb on + strand at 966.228 kb on + strand at 966.228 kb on + strand at 966.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 964,744 + -2.3 964,838 + BPHYT_RS04205 0.11 -1.8 964,840 + BPHYT_RS04205 0.11 -0.7 964,841 - BPHYT_RS04205 0.11 +0.1 964,841 - BPHYT_RS04205 0.11 +1.2 964,841 - BPHYT_RS04205 0.11 -1.8 964,841 - BPHYT_RS04205 0.11 -0.6 964,888 + BPHYT_RS04205 0.16 +1.6 964,888 + BPHYT_RS04205 0.16 -0.4 964,889 - BPHYT_RS04205 0.17 -1.7 964,889 - BPHYT_RS04205 0.17 -0.8 964,889 - BPHYT_RS04205 0.17 +0.2 964,964 + BPHYT_RS04205 0.25 +0.5 964,964 + BPHYT_RS04205 0.25 -0.6 965,042 + BPHYT_RS04205 0.34 -0.3 965,042 + BPHYT_RS04205 0.34 -1.2 965,042 + BPHYT_RS04205 0.34 -1.3 965,083 + BPHYT_RS04205 0.39 -1.6 965,663 + +0.1 965,663 + -1.3 965,664 - +0.2 965,805 - -0.9 965,879 + -1.8 966,228 + -1.2 966,228 + +0.2 966,229 - +0.5
Or see this region's nucleotide sequence