Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03035 and BPHYT_RS03040 overlap by 14 nucleotides BPHYT_RS03040 and BPHYT_RS03045 are separated by 200 nucleotides
BPHYT_RS03035: BPHYT_RS03035 - cytochrome C oxidase subunit I, at 676,241 to 677,866
_RS03035
BPHYT_RS03040: BPHYT_RS03040 - cytochrome C oxidase subunit II, at 677,853 to 678,425
_RS03040
BPHYT_RS03045: BPHYT_RS03045 - alcohol dehydrogenase, at 678,626 to 680,011
_RS03045
Position (kb) 677
678
679 Strain fitness (log2 ratio) -1
0
1
2 at 677.178 kb on + strand, within BPHYT_RS03035 at 677.179 kb on - strand, within BPHYT_RS03035 at 677.179 kb on - strand, within BPHYT_RS03035 at 677.188 kb on + strand, within BPHYT_RS03035 at 677.188 kb on + strand, within BPHYT_RS03035 at 677.189 kb on - strand at 677.190 kb on + strand, within BPHYT_RS03035 at 677.190 kb on + strand, within BPHYT_RS03035 at 677.190 kb on + strand, within BPHYT_RS03035 at 677.190 kb on + strand, within BPHYT_RS03035 at 677.191 kb on - strand, within BPHYT_RS03035 at 677.212 kb on - strand, within BPHYT_RS03035 at 677.484 kb on + strand, within BPHYT_RS03035 at 677.484 kb on + strand, within BPHYT_RS03035 at 677.484 kb on + strand, within BPHYT_RS03035 at 677.485 kb on - strand, within BPHYT_RS03035 at 677.487 kb on + strand, within BPHYT_RS03035 at 677.523 kb on + strand, within BPHYT_RS03035 at 677.524 kb on - strand, within BPHYT_RS03035 at 677.524 kb on - strand, within BPHYT_RS03035 at 677.692 kb on - strand, within BPHYT_RS03035 at 677.692 kb on - strand, within BPHYT_RS03035 at 677.692 kb on - strand, within BPHYT_RS03035 at 678.465 kb on + strand at 678.466 kb on - strand at 678.604 kb on - strand at 678.604 kb on - strand at 678.708 kb on + strand at 678.708 kb on + strand at 678.708 kb on + strand at 678.709 kb on - strand at 678.709 kb on - strand at 678.709 kb on - strand at 678.709 kb on - strand at 678.709 kb on - strand at 678.709 kb on - strand at 678.768 kb on + strand, within BPHYT_RS03045 at 678.967 kb on + strand, within BPHYT_RS03045 at 678.967 kb on + strand, within BPHYT_RS03045 at 678.968 kb on - strand, within BPHYT_RS03045 at 678.968 kb on - strand, within BPHYT_RS03045 at 678.968 kb on - strand, within BPHYT_RS03045 at 678.971 kb on - strand, within BPHYT_RS03045 at 679.062 kb on + strand, within BPHYT_RS03045 at 679.062 kb on + strand, within BPHYT_RS03045 at 679.062 kb on + strand, within BPHYT_RS03045 at 679.063 kb on - strand, within BPHYT_RS03045 at 679.077 kb on + strand, within BPHYT_RS03045 at 679.077 kb on + strand, within BPHYT_RS03045 at 679.078 kb on - strand, within BPHYT_RS03045 at 679.101 kb on + strand, within BPHYT_RS03045 at 679.270 kb on + strand, within BPHYT_RS03045 at 679.271 kb on - strand, within BPHYT_RS03045 at 679.320 kb on + strand, within BPHYT_RS03045 at 679.384 kb on - strand, within BPHYT_RS03045 at 679.401 kb on + strand, within BPHYT_RS03045 at 679.402 kb on - strand, within BPHYT_RS03045
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 677,178 + BPHYT_RS03035 0.58 +0.4 677,179 - BPHYT_RS03035 0.58 +1.1 677,179 - BPHYT_RS03035 0.58 -0.2 677,188 + BPHYT_RS03035 0.58 -0.1 677,188 + BPHYT_RS03035 0.58 -0.4 677,189 - +0.1 677,190 + BPHYT_RS03035 0.58 -0.5 677,190 + BPHYT_RS03035 0.58 -0.8 677,190 + BPHYT_RS03035 0.58 -0.4 677,190 + BPHYT_RS03035 0.58 -1.1 677,191 - BPHYT_RS03035 0.58 -0.2 677,212 - BPHYT_RS03035 0.60 +0.1 677,484 + BPHYT_RS03035 0.76 +0.3 677,484 + BPHYT_RS03035 0.76 +1.3 677,484 + BPHYT_RS03035 0.76 -0.8 677,485 - BPHYT_RS03035 0.77 -0.1 677,487 + BPHYT_RS03035 0.77 +0.1 677,523 + BPHYT_RS03035 0.79 -0.4 677,524 - BPHYT_RS03035 0.79 -0.5 677,524 - BPHYT_RS03035 0.79 +1.1 677,692 - BPHYT_RS03035 0.89 -1.2 677,692 - BPHYT_RS03035 0.89 -0.9 677,692 - BPHYT_RS03035 0.89 +1.0 678,465 + +1.8 678,466 - +1.1 678,604 - +0.4 678,604 - -1.2 678,708 + +1.1 678,708 + +0.2 678,708 + +2.1 678,709 - -0.1 678,709 - -0.1 678,709 - -1.2 678,709 - -0.3 678,709 - +1.8 678,709 - -0.8 678,768 + BPHYT_RS03045 0.10 +0.1 678,967 + BPHYT_RS03045 0.25 +0.5 678,967 + BPHYT_RS03045 0.25 +0.0 678,968 - BPHYT_RS03045 0.25 +0.2 678,968 - BPHYT_RS03045 0.25 +0.4 678,968 - BPHYT_RS03045 0.25 -0.5 678,971 - BPHYT_RS03045 0.25 -0.0 679,062 + BPHYT_RS03045 0.31 +0.4 679,062 + BPHYT_RS03045 0.31 +0.6 679,062 + BPHYT_RS03045 0.31 +2.7 679,063 - BPHYT_RS03045 0.32 +0.1 679,077 + BPHYT_RS03045 0.33 +0.1 679,077 + BPHYT_RS03045 0.33 -0.9 679,078 - BPHYT_RS03045 0.33 -1.2 679,101 + BPHYT_RS03045 0.34 -0.2 679,270 + BPHYT_RS03045 0.46 +1.0 679,271 - BPHYT_RS03045 0.47 -0.3 679,320 + BPHYT_RS03045 0.50 +1.1 679,384 - BPHYT_RS03045 0.55 +1.0 679,401 + BPHYT_RS03045 0.56 -0.2 679,402 - BPHYT_RS03045 0.56 +0.5
Or see this region's nucleotide sequence