Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01835 and BPHYT_RS01840 are separated by 41 nucleotides BPHYT_RS01840 and BPHYT_RS01845 are separated by 88 nucleotides BPHYT_RS01845 and BPHYT_RS01850 are separated by 268 nucleotides
BPHYT_RS01835: BPHYT_RS01835 - aldose epimerase, at 417,193 to 418,233
_RS01835
BPHYT_RS01840: BPHYT_RS01840 - endonuclease, at 418,275 to 419,072
_RS01840
BPHYT_RS01845: BPHYT_RS01845 - hypothetical protein, at 419,161 to 419,700
_RS01845
BPHYT_RS01850: BPHYT_RS01850 - ATPase AAA, at 419,969 to 420,946
_RS01850
Position (kb) 419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 418.231 kb on + strand at 418.232 kb on - strand at 418.276 kb on + strand at 418.298 kb on + strand at 418.300 kb on + strand at 418.300 kb on + strand at 418.300 kb on + strand at 418.300 kb on + strand at 418.301 kb on - strand at 418.301 kb on - strand at 418.301 kb on - strand at 418.997 kb on + strand at 418.998 kb on - strand at 419.038 kb on - strand at 419.472 kb on + strand, within BPHYT_RS01845 at 419.700 kb on + strand at 419.701 kb on - strand at 419.751 kb on + strand at 419.752 kb on - strand at 419.752 kb on - strand at 419.761 kb on - strand at 419.761 kb on - strand at 419.821 kb on + strand at 419.891 kb on + strand at 419.891 kb on + strand at 419.926 kb on + strand at 419.927 kb on - strand at 419.927 kb on - strand at 419.927 kb on - strand at 419.927 kb on - strand at 420.024 kb on - strand at 420.121 kb on + strand, within BPHYT_RS01850 at 420.341 kb on + strand, within BPHYT_RS01850 at 420.347 kb on + strand, within BPHYT_RS01850 at 420.347 kb on + strand, within BPHYT_RS01850 at 420.347 kb on + strand, within BPHYT_RS01850 at 420.348 kb on - strand, within BPHYT_RS01850 at 420.455 kb on + strand, within BPHYT_RS01850 at 420.456 kb on - strand, within BPHYT_RS01850 at 420.512 kb on + strand, within BPHYT_RS01850 at 420.512 kb on + strand, within BPHYT_RS01850 at 420.512 kb on + strand, within BPHYT_RS01850 at 420.512 kb on + strand, within BPHYT_RS01850 at 420.513 kb on - strand, within BPHYT_RS01850 at 420.513 kb on - strand, within BPHYT_RS01850 at 420.513 kb on - strand, within BPHYT_RS01850 at 420.533 kb on + strand, within BPHYT_RS01850 at 420.533 kb on + strand, within BPHYT_RS01850 at 420.533 kb on + strand, within BPHYT_RS01850 at 420.533 kb on + strand, within BPHYT_RS01850 at 420.533 kb on + strand, within BPHYT_RS01850 at 420.534 kb on - strand, within BPHYT_RS01850 at 420.534 kb on - strand, within BPHYT_RS01850 at 420.534 kb on - strand, within BPHYT_RS01850 at 420.677 kb on + strand, within BPHYT_RS01850 at 420.677 kb on + strand, within BPHYT_RS01850 at 420.677 kb on + strand, within BPHYT_RS01850 at 420.677 kb on + strand, within BPHYT_RS01850 at 420.678 kb on - strand, within BPHYT_RS01850 at 420.678 kb on - strand, within BPHYT_RS01850 at 420.678 kb on - strand, within BPHYT_RS01850
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 418,231 + -0.2 418,232 - +0.2 418,276 + -0.0 418,298 + +1.0 418,300 + +1.0 418,300 + +1.6 418,300 + +0.0 418,300 + -0.5 418,301 - +0.0 418,301 - -1.2 418,301 - -1.0 418,997 + -0.5 418,998 - -0.5 419,038 - -1.3 419,472 + BPHYT_RS01845 0.58 +0.5 419,700 + +1.1 419,701 - -1.0 419,751 + -0.1 419,752 - -0.9 419,752 - -2.3 419,761 - -1.0 419,761 - +3.0 419,821 + +0.0 419,891 + -1.8 419,891 + -0.8 419,926 + +0.0 419,927 - -0.8 419,927 - +0.0 419,927 - -0.5 419,927 - -1.0 420,024 - -0.5 420,121 + BPHYT_RS01850 0.16 -0.1 420,341 + BPHYT_RS01850 0.38 -0.5 420,347 + BPHYT_RS01850 0.39 +0.5 420,347 + BPHYT_RS01850 0.39 -2.4 420,347 + BPHYT_RS01850 0.39 -0.0 420,348 - BPHYT_RS01850 0.39 -3.0 420,455 + BPHYT_RS01850 0.50 +0.9 420,456 - BPHYT_RS01850 0.50 -0.7 420,512 + BPHYT_RS01850 0.56 +0.1 420,512 + BPHYT_RS01850 0.56 +0.4 420,512 + BPHYT_RS01850 0.56 -1.3 420,512 + BPHYT_RS01850 0.56 -0.6 420,513 - BPHYT_RS01850 0.56 +1.0 420,513 - BPHYT_RS01850 0.56 +0.1 420,513 - BPHYT_RS01850 0.56 -0.3 420,533 + BPHYT_RS01850 0.58 -0.4 420,533 + BPHYT_RS01850 0.58 +0.7 420,533 + BPHYT_RS01850 0.58 +2.0 420,533 + BPHYT_RS01850 0.58 -1.8 420,533 + BPHYT_RS01850 0.58 -1.0 420,534 - BPHYT_RS01850 0.58 +0.2 420,534 - BPHYT_RS01850 0.58 -0.6 420,534 - BPHYT_RS01850 0.58 -1.3 420,677 + BPHYT_RS01850 0.72 +0.2 420,677 + BPHYT_RS01850 0.72 +0.4 420,677 + BPHYT_RS01850 0.72 +0.3 420,677 + BPHYT_RS01850 0.72 -0.2 420,678 - BPHYT_RS01850 0.72 -0.2 420,678 - BPHYT_RS01850 0.72 -0.3 420,678 - BPHYT_RS01850 0.72 -1.0
Or see this region's nucleotide sequence