Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01365 and BPHYT_RS01370 are separated by 176 nucleotides
BPHYT_RS01365: BPHYT_RS01365 - cobalamin biosynthesis protein CobW, at 312,566 to 313,552
_RS01365
BPHYT_RS01370: BPHYT_RS01370 - cation ABC transporter substrate-binding protein, at 313,729 to 314,643
_RS01370
Position (kb) 312
313
314 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 311.566 kb on + strand at 311.566 kb on + strand at 311.566 kb on + strand at 311.566 kb on + strand at 311.566 kb on + strand at 311.567 kb on - strand at 311.589 kb on + strand at 311.589 kb on + strand at 311.600 kb on + strand at 311.600 kb on + strand at 311.600 kb on + strand at 311.600 kb on + strand at 311.601 kb on - strand at 311.850 kb on - strand at 311.850 kb on - strand at 311.850 kb on - strand at 311.850 kb on - strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.948 kb on - strand at 311.948 kb on - strand at 311.948 kb on - strand at 311.948 kb on - strand at 311.961 kb on + strand at 312.014 kb on + strand at 312.109 kb on - strand at 312.109 kb on - strand at 312.109 kb on - strand at 312.111 kb on + strand at 312.133 kb on + strand at 312.134 kb on - strand at 312.136 kb on + strand at 312.142 kb on + strand at 312.143 kb on - strand at 312.143 kb on - strand at 312.143 kb on - strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.151 kb on - strand at 312.180 kb on + strand at 312.180 kb on + strand at 312.181 kb on - strand at 312.238 kb on + strand at 312.239 kb on - strand at 312.239 kb on - strand at 312.436 kb on + strand at 312.436 kb on + strand at 312.437 kb on - strand at 312.481 kb on - strand at 312.567 kb on + strand at 312.567 kb on + strand at 312.567 kb on + strand at 312.568 kb on - strand at 312.751 kb on - strand, within BPHYT_RS01365 at 312.751 kb on - strand, within BPHYT_RS01365 at 312.751 kb on - strand, within BPHYT_RS01365 at 312.767 kb on - strand, within BPHYT_RS01365 at 312.771 kb on + strand, within BPHYT_RS01365 at 312.771 kb on + strand, within BPHYT_RS01365 at 312.771 kb on + strand, within BPHYT_RS01365 at 312.771 kb on + strand, within BPHYT_RS01365 at 312.772 kb on - strand, within BPHYT_RS01365 at 312.772 kb on - strand, within BPHYT_RS01365 at 312.772 kb on - strand, within BPHYT_RS01365 at 313.069 kb on + strand, within BPHYT_RS01365 at 313.170 kb on + strand, within BPHYT_RS01365 at 313.170 kb on + strand, within BPHYT_RS01365 at 313.459 kb on + strand at 313.460 kb on - strand at 313.555 kb on + strand at 313.556 kb on - strand at 313.577 kb on + strand at 313.683 kb on + strand at 313.766 kb on + strand at 313.767 kb on - strand at 313.838 kb on - strand, within BPHYT_RS01370 at 313.870 kb on + strand, within BPHYT_RS01370 at 313.870 kb on + strand, within BPHYT_RS01370 at 313.871 kb on - strand, within BPHYT_RS01370 at 313.871 kb on - strand, within BPHYT_RS01370 at 313.871 kb on - strand, within BPHYT_RS01370 at 313.918 kb on - strand, within BPHYT_RS01370 at 313.918 kb on - strand, within BPHYT_RS01370 at 313.918 kb on - strand, within BPHYT_RS01370 at 313.940 kb on + strand, within BPHYT_RS01370 at 314.183 kb on - strand, within BPHYT_RS01370 at 314.303 kb on - strand, within BPHYT_RS01370 at 314.303 kb on - strand, within BPHYT_RS01370 at 314.303 kb on - strand, within BPHYT_RS01370 at 314.303 kb on - strand, within BPHYT_RS01370 at 314.341 kb on + strand, within BPHYT_RS01370 at 314.341 kb on + strand, within BPHYT_RS01370 at 314.341 kb on + strand, within BPHYT_RS01370 at 314.443 kb on + strand, within BPHYT_RS01370 at 314.444 kb on - strand, within BPHYT_RS01370 at 314.525 kb on - strand, within BPHYT_RS01370
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 311,566 + -0.3 311,566 + +1.0 311,566 + -1.4 311,566 + -1.0 311,566 + -0.1 311,567 - +0.2 311,589 + +0.4 311,589 + -0.1 311,600 + +2.8 311,600 + +0.2 311,600 + -0.2 311,600 + +0.4 311,601 - +0.4 311,850 - -0.7 311,850 - +0.3 311,850 - +1.5 311,850 - -0.7 311,947 + -0.0 311,947 + -0.3 311,947 + +0.4 311,947 + -0.4 311,947 + +1.3 311,947 + +1.0 311,948 - +1.0 311,948 - +0.2 311,948 - -0.3 311,948 - -0.5 311,961 + +0.0 312,014 + -0.6 312,109 - +0.2 312,109 - -0.2 312,109 - +0.4 312,111 + +0.9 312,133 + -1.5 312,134 - +0.0 312,136 + -0.8 312,142 + +0.6 312,143 - +0.3 312,143 - -0.8 312,143 - -0.2 312,148 + -0.0 312,148 + +0.5 312,148 + +0.0 312,148 + -0.0 312,148 + -2.0 312,148 + +0.3 312,148 + +0.3 312,148 + +0.0 312,148 + +1.0 312,148 + -1.9 312,149 - +0.5 312,149 - -0.9 312,149 - -0.8 312,149 - +2.0 312,149 - -0.4 312,149 - -0.6 312,149 - +3.1 312,149 - +0.1 312,151 - -0.5 312,180 + -0.5 312,180 + +0.3 312,181 - -0.2 312,238 + -0.1 312,239 - +0.4 312,239 - +0.0 312,436 + -0.9 312,436 + +0.4 312,437 - +0.0 312,481 - +1.4 312,567 + +0.8 312,567 + -0.6 312,567 + +0.5 312,568 - -1.0 312,751 - BPHYT_RS01365 0.19 +4.1 312,751 - BPHYT_RS01365 0.19 +0.4 312,751 - BPHYT_RS01365 0.19 +0.2 312,767 - BPHYT_RS01365 0.20 +0.1 312,771 + BPHYT_RS01365 0.21 -0.2 312,771 + BPHYT_RS01365 0.21 +0.7 312,771 + BPHYT_RS01365 0.21 -0.7 312,771 + BPHYT_RS01365 0.21 +1.0 312,772 - BPHYT_RS01365 0.21 +0.4 312,772 - BPHYT_RS01365 0.21 -0.8 312,772 - BPHYT_RS01365 0.21 +0.1 313,069 + BPHYT_RS01365 0.51 +0.3 313,170 + BPHYT_RS01365 0.61 +0.0 313,170 + BPHYT_RS01365 0.61 -0.7 313,459 + -0.4 313,460 - -0.4 313,555 + +0.2 313,556 - +0.0 313,577 + -1.6 313,683 + -0.1 313,766 + -0.3 313,767 - -1.0 313,838 - BPHYT_RS01370 0.12 -1.2 313,870 + BPHYT_RS01370 0.15 -0.6 313,870 + BPHYT_RS01370 0.15 +0.2 313,871 - BPHYT_RS01370 0.16 -0.2 313,871 - BPHYT_RS01370 0.16 -0.3 313,871 - BPHYT_RS01370 0.16 -0.6 313,918 - BPHYT_RS01370 0.21 +0.3 313,918 - BPHYT_RS01370 0.21 -1.7 313,918 - BPHYT_RS01370 0.21 +0.2 313,940 + BPHYT_RS01370 0.23 +0.0 314,183 - BPHYT_RS01370 0.50 -0.2 314,303 - BPHYT_RS01370 0.63 +0.3 314,303 - BPHYT_RS01370 0.63 +3.5 314,303 - BPHYT_RS01370 0.63 +1.5 314,303 - BPHYT_RS01370 0.63 -0.1 314,341 + BPHYT_RS01370 0.67 +0.3 314,341 + BPHYT_RS01370 0.67 +1.0 314,341 + BPHYT_RS01370 0.67 +1.6 314,443 + BPHYT_RS01370 0.78 -0.0 314,444 - BPHYT_RS01370 0.78 +2.2 314,525 - BPHYT_RS01370 0.87 -2.0
Or see this region's nucleotide sequence