Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24290 and BPHYT_RS24295 are separated by 476 nucleotides BPHYT_RS24295 and BPHYT_RS24300 are separated by 148 nucleotides BPHYT_RS24300 and BPHYT_RS24305 are separated by 133 nucleotides
BPHYT_RS24290: BPHYT_RS24290 - hypothetical protein, at 1,015,797 to 1,016,516
_RS24290
BPHYT_RS24295: BPHYT_RS24295 - response regulator receiver, at 1,016,993 to 1,017,505
_RS24295
BPHYT_RS24300: BPHYT_RS24300 - Fur family transcriptional regulator, at 1,017,654 to 1,018,226
_RS24300
BPHYT_RS24305: BPHYT_RS24305 - glutathione S-transferase, at 1,018,360 to 1,018,986
_RS24305
Position (kb) 1016
1017
1018 Strain fitness (log2 ratio) -1
0
1 at 1016.423 kb on + strand, within BPHYT_RS24290 at 1016.423 kb on + strand, within BPHYT_RS24290 at 1016.424 kb on - strand, within BPHYT_RS24290 at 1016.424 kb on - strand, within BPHYT_RS24290 at 1016.424 kb on - strand, within BPHYT_RS24290 at 1016.445 kb on + strand at 1016.445 kb on + strand at 1016.446 kb on - strand at 1016.704 kb on - strand at 1016.704 kb on - strand at 1016.706 kb on + strand at 1016.706 kb on + strand at 1016.707 kb on - strand at 1016.707 kb on - strand at 1016.943 kb on + strand at 1017.302 kb on + strand, within BPHYT_RS24295 at 1018.237 kb on + strand at 1018.290 kb on + strand at 1018.383 kb on - strand at 1018.383 kb on - strand at 1018.411 kb on - strand at 1018.411 kb on - strand at 1018.411 kb on - strand at 1018.418 kb on + strand at 1018.484 kb on + strand, within BPHYT_RS24305
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,016,423 + BPHYT_RS24290 0.87 -0.4 1,016,423 + BPHYT_RS24290 0.87 -0.2 1,016,424 - BPHYT_RS24290 0.87 +0.5 1,016,424 - BPHYT_RS24290 0.87 +0.0 1,016,424 - BPHYT_RS24290 0.87 +0.3 1,016,445 + -0.3 1,016,445 + -0.6 1,016,446 - -0.2 1,016,704 - -0.3 1,016,704 - -0.4 1,016,706 + -1.4 1,016,706 + +0.8 1,016,707 - +1.7 1,016,707 - -0.6 1,016,943 + -0.1 1,017,302 + BPHYT_RS24295 0.60 -0.4 1,018,237 + +0.4 1,018,290 + -0.5 1,018,383 - +0.4 1,018,383 - -0.0 1,018,411 - -0.0 1,018,411 - -0.1 1,018,411 - -1.0 1,018,418 + +0.3 1,018,484 + BPHYT_RS24305 0.20 +0.5
Or see this region's nucleotide sequence