Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03560 and BPHYT_RS03565 are separated by 71 nucleotides BPHYT_RS03565 and BPHYT_RS03570 are separated by 330 nucleotides
BPHYT_RS03560: BPHYT_RS03560 - DNA repair protein, at 807,582 to 809,252
_RS03560
BPHYT_RS03565: BPHYT_RS03565 - NAD kinase, at 809,324 to 810,226
_RS03565
BPHYT_RS03570: BPHYT_RS03570 - heat-inducible transcription repressor HrcA, at 810,557 to 811,576
_RS03570
Position (kb) 809
810
811 Strain fitness (log2 ratio) -2
-1
0
1 at 808.382 kb on - strand, within BPHYT_RS03560 at 808.382 kb on - strand, within BPHYT_RS03560 at 808.397 kb on - strand, within BPHYT_RS03560 at 808.919 kb on + strand, within BPHYT_RS03560 at 808.947 kb on + strand, within BPHYT_RS03560 at 808.948 kb on - strand, within BPHYT_RS03560 at 808.948 kb on - strand, within BPHYT_RS03560 at 810.236 kb on - strand at 810.236 kb on - strand at 810.242 kb on + strand at 810.242 kb on + strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.246 kb on + strand at 810.247 kb on - strand at 810.325 kb on + strand at 810.514 kb on + strand at 810.561 kb on + strand at 810.562 kb on - strand at 810.605 kb on + strand at 810.844 kb on + strand, within BPHYT_RS03570 at 810.844 kb on + strand, within BPHYT_RS03570 at 810.845 kb on - strand, within BPHYT_RS03570 at 810.845 kb on - strand, within BPHYT_RS03570 at 810.845 kb on - strand, within BPHYT_RS03570 at 811.003 kb on + strand, within BPHYT_RS03570 at 811.004 kb on - strand, within BPHYT_RS03570 at 811.091 kb on + strand, within BPHYT_RS03570 at 811.091 kb on + strand, within BPHYT_RS03570 at 811.091 kb on + strand, within BPHYT_RS03570 at 811.092 kb on - strand, within BPHYT_RS03570
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 808,382 - BPHYT_RS03560 0.48 -0.7 808,382 - BPHYT_RS03560 0.48 +0.1 808,397 - BPHYT_RS03560 0.49 -0.3 808,919 + BPHYT_RS03560 0.80 -0.7 808,947 + BPHYT_RS03560 0.82 +0.9 808,948 - BPHYT_RS03560 0.82 -0.2 808,948 - BPHYT_RS03560 0.82 -0.2 810,236 - +0.5 810,236 - -0.4 810,242 + -0.5 810,242 + -0.1 810,243 - -0.5 810,243 - +0.9 810,243 - +0.1 810,243 - -0.9 810,243 - +0.9 810,243 - +0.0 810,246 + -0.4 810,247 - -0.5 810,325 + -1.0 810,514 + +0.3 810,561 + +1.5 810,562 - -0.9 810,605 + -2.2 810,844 + BPHYT_RS03570 0.28 -2.3 810,844 + BPHYT_RS03570 0.28 -1.9 810,845 - BPHYT_RS03570 0.28 -2.2 810,845 - BPHYT_RS03570 0.28 -2.6 810,845 - BPHYT_RS03570 0.28 -0.7 811,003 + BPHYT_RS03570 0.44 -1.8 811,004 - BPHYT_RS03570 0.44 -1.1 811,091 + BPHYT_RS03570 0.52 -1.1 811,091 + BPHYT_RS03570 0.52 -2.5 811,091 + BPHYT_RS03570 0.52 -1.1 811,092 - BPHYT_RS03570 0.52 -0.9
Or see this region's nucleotide sequence