Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02520 and BPHYT_RS02525 are separated by 78 nucleotides BPHYT_RS02525 and BPHYT_RS02530 are separated by 173 nucleotides
BPHYT_RS02520: BPHYT_RS02520 - Fis family transcriptional regulator, at 572,474 to 573,823
_RS02520
BPHYT_RS02525: BPHYT_RS02525 - membrane protein, at 573,902 to 574,432
_RS02525
BPHYT_RS02530: BPHYT_RS02530 - hypothetical protein, at 574,606 to 575,319
_RS02530
Position (kb) 573
574
575 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 573.143 kb on - strand, within BPHYT_RS02520 at 573.246 kb on + strand, within BPHYT_RS02520 at 573.341 kb on - strand, within BPHYT_RS02520 at 573.770 kb on + strand at 573.963 kb on - strand, within BPHYT_RS02525 at 573.963 kb on - strand, within BPHYT_RS02525 at 573.966 kb on + strand, within BPHYT_RS02525 at 573.966 kb on + strand, within BPHYT_RS02525 at 574.095 kb on + strand, within BPHYT_RS02525 at 574.096 kb on - strand, within BPHYT_RS02525 at 574.096 kb on - strand, within BPHYT_RS02525 at 574.107 kb on + strand at 574.107 kb on + strand, within BPHYT_RS02525 at 574.107 kb on + strand, within BPHYT_RS02525 at 574.108 kb on - strand, within BPHYT_RS02525 at 574.108 kb on - strand, within BPHYT_RS02525 at 574.108 kb on - strand, within BPHYT_RS02525 at 574.123 kb on - strand, within BPHYT_RS02525 at 574.171 kb on + strand, within BPHYT_RS02525 at 574.173 kb on + strand, within BPHYT_RS02525 at 574.173 kb on + strand, within BPHYT_RS02525 at 574.174 kb on - strand, within BPHYT_RS02525 at 574.174 kb on - strand, within BPHYT_RS02525 at 574.174 kb on - strand, within BPHYT_RS02525 at 574.243 kb on - strand, within BPHYT_RS02525 at 574.243 kb on - strand, within BPHYT_RS02525 at 574.338 kb on + strand, within BPHYT_RS02525 at 574.339 kb on - strand, within BPHYT_RS02525 at 574.383 kb on + strand at 574.383 kb on + strand at 574.384 kb on - strand at 574.514 kb on + strand at 574.519 kb on + strand at 574.564 kb on - strand at 574.566 kb on + strand at 574.567 kb on - strand at 574.575 kb on + strand at 574.575 kb on + strand at 574.575 kb on + strand at 574.576 kb on - strand at 574.576 kb on - strand at 574.576 kb on - strand at 574.889 kb on - strand, within BPHYT_RS02530 at 575.100 kb on + strand, within BPHYT_RS02530 at 575.207 kb on - strand, within BPHYT_RS02530 at 575.239 kb on + strand, within BPHYT_RS02530 at 575.239 kb on + strand, within BPHYT_RS02530 at 575.314 kb on + strand at 575.406 kb on + strand at 575.418 kb on + strand at 575.418 kb on + strand at 575.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 573,143 - BPHYT_RS02520 0.50 +1.2 573,246 + BPHYT_RS02520 0.57 -0.3 573,341 - BPHYT_RS02520 0.64 -0.5 573,770 + -0.5 573,963 - BPHYT_RS02525 0.11 -1.9 573,963 - BPHYT_RS02525 0.11 -1.6 573,966 + BPHYT_RS02525 0.12 -0.6 573,966 + BPHYT_RS02525 0.12 -1.4 574,095 + BPHYT_RS02525 0.36 +1.0 574,096 - BPHYT_RS02525 0.37 -2.9 574,096 - BPHYT_RS02525 0.37 -3.8 574,107 + -0.0 574,107 + BPHYT_RS02525 0.39 -1.6 574,107 + BPHYT_RS02525 0.39 -2.2 574,108 - BPHYT_RS02525 0.39 -3.6 574,108 - BPHYT_RS02525 0.39 -2.7 574,108 - BPHYT_RS02525 0.39 -1.4 574,123 - BPHYT_RS02525 0.42 -0.6 574,171 + BPHYT_RS02525 0.51 -0.0 574,173 + BPHYT_RS02525 0.51 -1.0 574,173 + BPHYT_RS02525 0.51 -1.2 574,174 - BPHYT_RS02525 0.51 -1.3 574,174 - BPHYT_RS02525 0.51 -3.2 574,174 - BPHYT_RS02525 0.51 -0.6 574,243 - BPHYT_RS02525 0.64 -3.5 574,243 - BPHYT_RS02525 0.64 -2.2 574,338 + BPHYT_RS02525 0.82 -1.9 574,339 - BPHYT_RS02525 0.82 -2.9 574,383 + -0.0 574,383 + -0.6 574,384 - -2.0 574,514 + -2.3 574,519 + -3.0 574,564 - +0.5 574,566 + -0.0 574,567 - -0.1 574,575 + -0.4 574,575 + -0.3 574,575 + +0.4 574,576 - +0.2 574,576 - -0.3 574,576 - +0.1 574,889 - BPHYT_RS02530 0.40 -0.9 575,100 + BPHYT_RS02530 0.69 -0.5 575,207 - BPHYT_RS02530 0.84 +0.2 575,239 + BPHYT_RS02530 0.89 -0.7 575,239 + BPHYT_RS02530 0.89 +0.1 575,314 + -1.9 575,406 + +3.4 575,418 + +0.7 575,418 + +0.3 575,419 - +0.8
Or see this region's nucleotide sequence