Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02050 and BPHYT_RS02055 overlap by 4 nucleotides BPHYT_RS02055 and BPHYT_RS02060 are separated by 195 nucleotides
BPHYT_RS02050: BPHYT_RS02050 - D-mannose isomerase (EC 5.3.1.7) <small>(from data)</small>, at 468,044 to 469,327
_RS02050
BPHYT_RS02055: BPHYT_RS02055 - LacI family transcription regulator, at 469,324 to 470,310
_RS02055
BPHYT_RS02060: BPHYT_RS02060 - diguanylate cyclase, at 470,506 to 472,356
_RS02060
Position (kb) 469
470
471 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 468.342 kb on + strand, within BPHYT_RS02050 at 468.342 kb on + strand, within BPHYT_RS02050 at 468.342 kb on + strand, within BPHYT_RS02050 at 468.342 kb on + strand, within BPHYT_RS02050 at 468.343 kb on - strand, within BPHYT_RS02050 at 468.384 kb on + strand, within BPHYT_RS02050 at 468.385 kb on - strand, within BPHYT_RS02050 at 468.385 kb on - strand, within BPHYT_RS02050 at 468.387 kb on + strand, within BPHYT_RS02050 at 468.388 kb on - strand, within BPHYT_RS02050 at 468.573 kb on + strand, within BPHYT_RS02050 at 468.573 kb on + strand, within BPHYT_RS02050 at 468.652 kb on + strand, within BPHYT_RS02050 at 468.685 kb on - strand, within BPHYT_RS02050 at 468.685 kb on - strand, within BPHYT_RS02050 at 468.990 kb on + strand, within BPHYT_RS02050 at 469.050 kb on + strand, within BPHYT_RS02050 at 469.096 kb on - strand, within BPHYT_RS02050 at 469.096 kb on - strand, within BPHYT_RS02050 at 469.534 kb on + strand, within BPHYT_RS02055 at 470.652 kb on - strand at 470.652 kb on - strand at 470.780 kb on + strand, within BPHYT_RS02060 at 470.963 kb on + strand, within BPHYT_RS02060 at 470.970 kb on - strand, within BPHYT_RS02060 at 471.009 kb on - strand, within BPHYT_RS02060 at 471.017 kb on + strand, within BPHYT_RS02060 at 471.209 kb on + strand, within BPHYT_RS02060
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 468,342 + BPHYT_RS02050 0.23 -0.6 468,342 + BPHYT_RS02050 0.23 -2.3 468,342 + BPHYT_RS02050 0.23 -0.7 468,342 + BPHYT_RS02050 0.23 -0.2 468,343 - BPHYT_RS02050 0.23 +0.2 468,384 + BPHYT_RS02050 0.26 -0.2 468,385 - BPHYT_RS02050 0.27 +0.3 468,385 - BPHYT_RS02050 0.27 +0.6 468,387 + BPHYT_RS02050 0.27 +0.9 468,388 - BPHYT_RS02050 0.27 +0.5 468,573 + BPHYT_RS02050 0.41 -1.1 468,573 + BPHYT_RS02050 0.41 -1.2 468,652 + BPHYT_RS02050 0.47 -0.4 468,685 - BPHYT_RS02050 0.50 -0.6 468,685 - BPHYT_RS02050 0.50 -0.6 468,990 + BPHYT_RS02050 0.74 -3.2 469,050 + BPHYT_RS02050 0.78 -1.5 469,096 - BPHYT_RS02050 0.82 +0.4 469,096 - BPHYT_RS02050 0.82 +0.2 469,534 + BPHYT_RS02055 0.21 +0.2 470,652 - +0.0 470,652 - +0.4 470,780 + BPHYT_RS02060 0.15 +0.1 470,963 + BPHYT_RS02060 0.25 +0.1 470,970 - BPHYT_RS02060 0.25 +0.0 471,009 - BPHYT_RS02060 0.27 -0.2 471,017 + BPHYT_RS02060 0.28 +1.3 471,209 + BPHYT_RS02060 0.38 -1.0
Or see this region's nucleotide sequence