Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01675 and BPHYT_RS01680 are separated by 180 nucleotides BPHYT_RS01680 and BPHYT_RS01685 are separated by 461 nucleotides
BPHYT_RS01675: BPHYT_RS01675 - S-adenosylmethionine synthase, at 380,071 to 381,261
_RS01675
BPHYT_RS01680: BPHYT_RS01680 - hypothetical protein, at 381,442 to 381,807
_RS01680
BPHYT_RS01685: BPHYT_RS01685 - phytanoyl-CoA dioxygenase, at 382,269 to 383,030
_RS01685
Position (kb) 381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 381.434 kb on + strand at 381.435 kb on - strand at 381.435 kb on - strand at 381.443 kb on + strand at 381.801 kb on + strand at 381.801 kb on + strand at 381.801 kb on + strand at 381.801 kb on + strand at 381.802 kb on - strand at 381.802 kb on - strand at 381.802 kb on - strand at 381.820 kb on - strand at 381.820 kb on - strand at 381.933 kb on - strand at 381.933 kb on - strand at 381.960 kb on - strand at 382.007 kb on - strand at 382.007 kb on - strand at 382.027 kb on + strand at 382.027 kb on + strand at 382.028 kb on - strand at 382.061 kb on + strand at 382.170 kb on - strand at 382.170 kb on - strand at 382.170 kb on - strand at 382.176 kb on + strand at 382.176 kb on + strand at 382.176 kb on + strand at 382.176 kb on + strand at 382.177 kb on - strand at 382.177 kb on - strand at 382.265 kb on + strand at 382.265 kb on + strand at 382.266 kb on - strand at 382.266 kb on - strand at 382.266 kb on - strand at 382.266 kb on - strand at 382.266 kb on - strand at 382.434 kb on + strand, within BPHYT_RS01685 at 382.475 kb on + strand, within BPHYT_RS01685 at 382.475 kb on + strand, within BPHYT_RS01685 at 382.475 kb on + strand, within BPHYT_RS01685 at 382.476 kb on - strand, within BPHYT_RS01685 at 382.476 kb on - strand, within BPHYT_RS01685 at 382.476 kb on - strand, within BPHYT_RS01685 at 382.500 kb on + strand, within BPHYT_RS01685 at 382.500 kb on + strand, within BPHYT_RS01685 at 382.500 kb on + strand, within BPHYT_RS01685 at 382.566 kb on + strand, within BPHYT_RS01685 at 382.567 kb on - strand, within BPHYT_RS01685 at 382.567 kb on - strand, within BPHYT_RS01685 at 382.567 kb on - strand, within BPHYT_RS01685 at 382.567 kb on - strand, within BPHYT_RS01685 at 382.605 kb on - strand, within BPHYT_RS01685 at 382.633 kb on - strand, within BPHYT_RS01685
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 381,434 + +0.8 381,435 - +2.2 381,435 - +0.3 381,443 + -0.2 381,801 + +0.2 381,801 + -0.5 381,801 + +0.5 381,801 + -0.1 381,802 - -0.2 381,802 - +0.5 381,802 - +0.1 381,820 - -1.3 381,820 - -0.4 381,933 - +0.0 381,933 - +0.2 381,960 - -0.1 382,007 - -0.1 382,007 - -0.3 382,027 + -0.2 382,027 + +0.0 382,028 - +1.2 382,061 + +0.3 382,170 - +0.1 382,170 - +0.5 382,170 - -0.7 382,176 + +1.2 382,176 + +0.1 382,176 + +1.2 382,176 + +0.6 382,177 - -0.0 382,177 - -0.9 382,265 + +0.4 382,265 + +4.2 382,266 - -2.9 382,266 - -0.8 382,266 - -0.4 382,266 - -1.6 382,266 - -1.3 382,434 + BPHYT_RS01685 0.22 -2.7 382,475 + BPHYT_RS01685 0.27 -1.2 382,475 + BPHYT_RS01685 0.27 -0.1 382,475 + BPHYT_RS01685 0.27 -0.9 382,476 - BPHYT_RS01685 0.27 -1.4 382,476 - BPHYT_RS01685 0.27 -1.1 382,476 - BPHYT_RS01685 0.27 -0.9 382,500 + BPHYT_RS01685 0.30 -0.7 382,500 + BPHYT_RS01685 0.30 -1.6 382,500 + BPHYT_RS01685 0.30 +0.5 382,566 + BPHYT_RS01685 0.39 -1.1 382,567 - BPHYT_RS01685 0.39 -0.2 382,567 - BPHYT_RS01685 0.39 -1.7 382,567 - BPHYT_RS01685 0.39 -0.8 382,567 - BPHYT_RS01685 0.39 -3.0 382,605 - BPHYT_RS01685 0.44 -2.1 382,633 - BPHYT_RS01685 0.48 +0.6
Or see this region's nucleotide sequence