Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01605 and BPHYT_RS01610 are separated by 227 nucleotides BPHYT_RS01610 and BPHYT_RS01615 are separated by 669 nucleotides
BPHYT_RS01600: BPHYT_RS01600 - dihydroorotate oxidase, at 363,108 to 363,791
_RS01600
BPHYT_RS01605: BPHYT_RS01605 - HAD family hydrolase, at 363,758 to 364,561
_RS01605
BPHYT_RS01610: BPHYT_RS01610 - acetylglutamate kinase, at 364,789 to 365,688
_RS01610
BPHYT_RS01615: BPHYT_RS01615 - hypothetical protein, at 366,358 to 367,995
_RS01615
Position (kb) 364
365
366 Strain fitness (log2 ratio) -1
0
1 at 363.845 kb on + strand, within BPHYT_RS01605 at 363.872 kb on - strand, within BPHYT_RS01605 at 363.879 kb on + strand, within BPHYT_RS01605 at 363.879 kb on + strand, within BPHYT_RS01605 at 363.879 kb on + strand, within BPHYT_RS01605 at 363.879 kb on + strand, within BPHYT_RS01605 at 363.879 kb on + strand, within BPHYT_RS01605 at 363.880 kb on - strand, within BPHYT_RS01605 at 363.880 kb on - strand, within BPHYT_RS01605 at 364.111 kb on + strand, within BPHYT_RS01605 at 364.112 kb on - strand, within BPHYT_RS01605 at 364.179 kb on + strand, within BPHYT_RS01605 at 364.180 kb on - strand, within BPHYT_RS01605 at 364.180 kb on - strand, within BPHYT_RS01605 at 364.356 kb on + strand, within BPHYT_RS01605 at 364.356 kb on + strand, within BPHYT_RS01605 at 364.426 kb on - strand, within BPHYT_RS01605 at 364.426 kb on - strand, within BPHYT_RS01605 at 364.710 kb on + strand at 365.716 kb on - strand at 366.097 kb on + strand at 366.286 kb on + strand at 366.286 kb on + strand at 366.287 kb on - strand at 366.287 kb on - strand at 366.287 kb on - strand at 366.304 kb on + strand at 366.304 kb on + strand at 366.304 kb on + strand at 366.305 kb on - strand at 366.307 kb on + strand at 366.585 kb on + strand, within BPHYT_RS01615 at 366.585 kb on + strand, within BPHYT_RS01615 at 366.622 kb on - strand, within BPHYT_RS01615
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 363,845 + BPHYT_RS01605 0.11 +0.4 363,872 - BPHYT_RS01605 0.14 +0.7 363,879 + BPHYT_RS01605 0.15 +0.2 363,879 + BPHYT_RS01605 0.15 -1.4 363,879 + BPHYT_RS01605 0.15 -0.1 363,879 + BPHYT_RS01605 0.15 -0.0 363,879 + BPHYT_RS01605 0.15 +0.2 363,880 - BPHYT_RS01605 0.15 +0.3 363,880 - BPHYT_RS01605 0.15 +0.5 364,111 + BPHYT_RS01605 0.44 -0.7 364,112 - BPHYT_RS01605 0.44 +0.1 364,179 + BPHYT_RS01605 0.52 -0.1 364,180 - BPHYT_RS01605 0.52 +0.3 364,180 - BPHYT_RS01605 0.52 +1.7 364,356 + BPHYT_RS01605 0.74 -0.1 364,356 + BPHYT_RS01605 0.74 +0.2 364,426 - BPHYT_RS01605 0.83 -0.7 364,426 - BPHYT_RS01605 0.83 -0.5 364,710 + +0.3 365,716 - +0.4 366,097 + -0.5 366,286 + -1.3 366,286 + +0.5 366,287 - +0.1 366,287 - -0.5 366,287 - +0.6 366,304 + +0.0 366,304 + +0.8 366,304 + -0.1 366,305 - +0.9 366,307 + -0.6 366,585 + BPHYT_RS01615 0.14 +0.0 366,585 + BPHYT_RS01615 0.14 -0.0 366,622 - BPHYT_RS01615 0.16 +0.0
Or see this region's nucleotide sequence