Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS30290 and BPHYT_RS30295 are separated by 56 nucleotides BPHYT_RS30295 and BPHYT_RS30300 are separated by 47 nucleotides BPHYT_RS30300 and BPHYT_RS30305 are separated by 2 nucleotides
BPHYT_RS30290: BPHYT_RS30290 - MFS transporter, at 2,351,734 to 2,353,092
_RS30290
BPHYT_RS30295: BPHYT_RS30295 - acyl-CoA dehydrogenase, at 2,353,149 to 2,354,366
_RS30295
BPHYT_RS30300: BPHYT_RS30300 - FMN reductase, at 2,354,414 to 2,354,950
_RS30300
BPHYT_RS30305: BPHYT_RS30305 - ethyl tert-butyl ether degradation EthD, at 2,354,953 to 2,355,663
_RS30305
Position (kb) 2353
2354
2355 Strain fitness (log2 ratio) -2
-1
0
1 at 2353.522 kb on - strand, within BPHYT_RS30295 at 2354.205 kb on + strand, within BPHYT_RS30295 at 2354.589 kb on - strand, within BPHYT_RS30300 at 2354.622 kb on + strand, within BPHYT_RS30300 at 2354.874 kb on - strand, within BPHYT_RS30300 at 2355.314 kb on - strand, within BPHYT_RS30305
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 2,353,522 - BPHYT_RS30295 0.31 -1.0 2,354,205 + BPHYT_RS30295 0.87 -2.2 2,354,589 - BPHYT_RS30300 0.33 -0.3 2,354,622 + BPHYT_RS30300 0.39 -1.8 2,354,874 - BPHYT_RS30300 0.86 -0.6 2,355,314 - BPHYT_RS30305 0.51 -1.0
Or see this region's nucleotide sequence