Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27880 and BPHYT_RS27890 are separated by 820 nucleotides BPHYT_RS27890 and BPHYT_RS27895 are separated by 42 nucleotides BPHYT_RS27895 and BPHYT_RS27900 are separated by 172 nucleotides
BPHYT_RS27880: BPHYT_RS27880 - diguanylate phosphodiesterase, at 1,818,252 to 1,821,431
_RS27880
BPHYT_RS27890: BPHYT_RS27890 - hypothetical protein, at 1,822,252 to 1,822,512
_RS27890
BPHYT_RS27895: BPHYT_RS27895 - enoyl-CoA hydratase, at 1,822,555 to 1,822,998
_RS27895
BPHYT_RS27900: BPHYT_RS27900 - 2-hydroxyacid dehydrogenase, at 1,823,171 to 1,824,160
_RS27900
Position (kb) 1822
1823 Strain fitness (log2 ratio) -2
-1
0
1 at 1821.283 kb on + strand at 1821.570 kb on - strand at 1822.417 kb on + strand, within BPHYT_RS27890 at 1822.533 kb on + strand at 1822.589 kb on - strand at 1822.643 kb on + strand, within BPHYT_RS27895 at 1822.853 kb on + strand, within BPHYT_RS27895 at 1822.854 kb on - strand, within BPHYT_RS27895 at 1823.004 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,821,283 + -1.5 1,821,570 - +0.5 1,822,417 + BPHYT_RS27890 0.63 -1.5 1,822,533 + +0.7 1,822,589 - -0.5 1,822,643 + BPHYT_RS27895 0.20 -0.3 1,822,853 + BPHYT_RS27895 0.67 +1.2 1,822,854 - BPHYT_RS27895 0.67 -1.9 1,823,004 + -0.1
Or see this region's nucleotide sequence