Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25795

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS25790 and BPHYT_RS25795 are separated by 146 nucleotidesBPHYT_RS25795 and BPHYT_RS25800 are separated by 95 nucleotides BPHYT_RS25790: BPHYT_RS25790 - sugar ABC transporter ATP-binding protein, at 1,358,153 to 1,359,655 _RS25790 BPHYT_RS25795: BPHYT_RS25795 - LacI family transcription regulator, at 1,359,802 to 1,360,806 _RS25795 BPHYT_RS25800: BPHYT_RS25800 - sugar ABC transporter permease, at 1,360,902 to 1,361,960 _RS25800 Position (kb) 1359 1360 1361Strain fitness (log2 ratio) -1 0 1at 1359.821 kb on + strandat 1359.822 kb on - strandat 1361.189 kb on - strand, within BPHYT_RS25800at 1361.276 kb on - strand, within BPHYT_RS25800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
1,359,821 + -0.5
1,359,822 - +0.3
1,361,189 - BPHYT_RS25800 0.27 +0.5
1,361,276 - BPHYT_RS25800 0.35 -0.0

Or see this region's nucleotide sequence