Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25610 and BPHYT_RS25615 are separated by 452 nucleotides BPHYT_RS25615 and BPHYT_RS25620 are separated by 3 nucleotides BPHYT_RS25620 and BPHYT_RS25625 are separated by 10 nucleotides
BPHYT_RS25610: BPHYT_RS25610 - HAD family hydrolase, at 1,318,862 to 1,319,548
_RS25610
BPHYT_RS25615: BPHYT_RS25615 - alkyl hydroperoxide reductase, at 1,320,001 to 1,320,654
_RS25615
BPHYT_RS25620: BPHYT_RS25620 - hypothetical protein, at 1,320,658 to 1,321,641
_RS25620
BPHYT_RS25625: BPHYT_RS25625 - glutathione S-transferase, at 1,321,652 to 1,322,356
_RS25625
Position (kb) 1320
1321 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1319.434 kb on - strand, within BPHYT_RS25610 at 1319.723 kb on - strand at 1320.541 kb on + strand, within BPHYT_RS25615 at 1320.564 kb on + strand, within BPHYT_RS25615 at 1320.565 kb on - strand, within BPHYT_RS25615 at 1320.763 kb on - strand, within BPHYT_RS25620 at 1320.935 kb on + strand, within BPHYT_RS25620 at 1321.218 kb on + strand, within BPHYT_RS25620 at 1321.222 kb on + strand, within BPHYT_RS25620 at 1321.223 kb on - strand, within BPHYT_RS25620 at 1321.379 kb on - strand, within BPHYT_RS25620 at 1321.417 kb on + strand, within BPHYT_RS25620 at 1321.417 kb on + strand, within BPHYT_RS25620 at 1321.417 kb on + strand, within BPHYT_RS25620
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,319,434 - BPHYT_RS25610 0.83 +0.4 1,319,723 - -1.5 1,320,541 + BPHYT_RS25615 0.83 +1.3 1,320,564 + BPHYT_RS25615 0.86 +3.7 1,320,565 - BPHYT_RS25615 0.86 -0.4 1,320,763 - BPHYT_RS25620 0.11 -0.8 1,320,935 + BPHYT_RS25620 0.28 -1.8 1,321,218 + BPHYT_RS25620 0.57 +0.9 1,321,222 + BPHYT_RS25620 0.57 +0.6 1,321,223 - BPHYT_RS25620 0.57 +0.4 1,321,379 - BPHYT_RS25620 0.73 -0.7 1,321,417 + BPHYT_RS25620 0.77 +0.3 1,321,417 + BPHYT_RS25620 0.77 -1.0 1,321,417 + BPHYT_RS25620 0.77 -1.2
Or see this region's nucleotide sequence