Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25530 and BPHYT_RS25535 overlap by 1 nucleotides BPHYT_RS25535 and BPHYT_RS25540 are separated by 64 nucleotides BPHYT_RS25540 and BPHYT_RS25545 are separated by 347 nucleotides
BPHYT_RS25530: BPHYT_RS25530 - thioredoxin, at 1,301,432 to 1,301,821
_RS25530
BPHYT_RS25535: BPHYT_RS25535 - cytochrome C biogenesis protein, at 1,301,821 to 1,302,549
_RS25535
BPHYT_RS25540: BPHYT_RS25540 - phosphohydrolase, at 1,302,614 to 1,303,438
_RS25540
BPHYT_RS25545: BPHYT_RS25545 - hypothetical protein, at 1,303,786 to 1,305,726
_RS25545
Position (kb) 1302
1303
1304 Strain fitness (log2 ratio) -1
0
1 at 1301.849 kb on + strand at 1302.583 kb on - strand at 1302.768 kb on - strand, within BPHYT_RS25540 at 1302.913 kb on - strand, within BPHYT_RS25540 at 1302.998 kb on - strand, within BPHYT_RS25540 at 1303.374 kb on + strand at 1303.418 kb on - strand at 1303.418 kb on - strand at 1303.859 kb on - strand at 1303.954 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,301,849 + -0.2 1,302,583 - +1.4 1,302,768 - BPHYT_RS25540 0.19 +0.4 1,302,913 - BPHYT_RS25540 0.36 -1.3 1,302,998 - BPHYT_RS25540 0.47 -1.7 1,303,374 + +0.3 1,303,418 - -1.5 1,303,418 - +0.1 1,303,859 - +0.9 1,303,954 - +0.4
Or see this region's nucleotide sequence