Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23245 and BPHYT_RS23250 are separated by 127 nucleotides BPHYT_RS23250 and BPHYT_RS23255 are separated by 105 nucleotides
BPHYT_RS23245: BPHYT_RS23245 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 779,105 to 780,223
_RS23245
BPHYT_RS23250: BPHYT_RS23250 - hypothetical protein, at 780,351 to 781,172
_RS23250
BPHYT_RS23255: BPHYT_RS23255 - TetR family transcriptional regulator, at 781,278 to 782,027
_RS23255
Position (kb) 780
781
782 Strain fitness (log2 ratio) -2
-1
0
1
2 at 779.710 kb on - strand, within BPHYT_RS23245 at 779.710 kb on - strand, within BPHYT_RS23245 at 779.844 kb on + strand, within BPHYT_RS23245 at 779.844 kb on + strand, within BPHYT_RS23245 at 779.845 kb on - strand, within BPHYT_RS23245 at 779.883 kb on + strand, within BPHYT_RS23245 at 779.916 kb on + strand, within BPHYT_RS23245 at 779.917 kb on - strand, within BPHYT_RS23245 at 780.421 kb on + strand at 780.422 kb on - strand at 780.585 kb on + strand, within BPHYT_RS23250 at 780.711 kb on + strand, within BPHYT_RS23250 at 781.209 kb on - strand at 781.246 kb on + strand at 781.357 kb on - strand, within BPHYT_RS23255 at 781.417 kb on - strand, within BPHYT_RS23255 at 782.028 kb on - strand at 782.121 kb on + strand at 782.162 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 779,710 - BPHYT_RS23245 0.54 +0.3 779,710 - BPHYT_RS23245 0.54 -2.4 779,844 + BPHYT_RS23245 0.66 -0.2 779,844 + BPHYT_RS23245 0.66 -0.8 779,845 - BPHYT_RS23245 0.66 -1.3 779,883 + BPHYT_RS23245 0.70 -0.2 779,916 + BPHYT_RS23245 0.72 -0.1 779,917 - BPHYT_RS23245 0.73 +2.1 780,421 + -1.6 780,422 - -1.3 780,585 + BPHYT_RS23250 0.28 -1.8 780,711 + BPHYT_RS23250 0.44 -1.2 781,209 - -0.8 781,246 + -1.7 781,357 - BPHYT_RS23255 0.11 +1.3 781,417 - BPHYT_RS23255 0.19 -1.4 782,028 - -0.9 782,121 + +0.5 782,162 + -0.2
Or see this region's nucleotide sequence