Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21215 and BPHYT_RS21220 are separated by 403 nucleotides BPHYT_RS21220 and BPHYT_RS21225 are separated by 289 nucleotides
BPHYT_RS21215: BPHYT_RS21215 - Crp/Fnr family transcriptional regulator, at 322,022 to 322,678
_RS21215
BPHYT_RS21220: BPHYT_RS21220 - universal stress protein A, at 323,082 to 323,549
_RS21220
BPHYT_RS21225: BPHYT_RS21225 - GntR family transcriptional regulator, at 323,839 to 324,528
_RS21225
Position (kb) 323
324 Strain fitness (log2 ratio) -2
-1
0
1
2 at 322.324 kb on + strand, within BPHYT_RS21215 at 322.324 kb on + strand, within BPHYT_RS21215 at 322.324 kb on + strand, within BPHYT_RS21215 at 322.324 kb on + strand, within BPHYT_RS21215 at 322.325 kb on - strand, within BPHYT_RS21215 at 322.325 kb on - strand, within BPHYT_RS21215 at 322.545 kb on + strand, within BPHYT_RS21215 at 322.546 kb on - strand, within BPHYT_RS21215 at 322.546 kb on - strand, within BPHYT_RS21215 at 322.575 kb on + strand, within BPHYT_RS21215 at 322.813 kb on + strand at 322.813 kb on + strand at 322.813 kb on + strand at 322.845 kb on + strand at 322.846 kb on - strand at 322.991 kb on + strand at 323.416 kb on + strand, within BPHYT_RS21220 at 323.416 kb on + strand, within BPHYT_RS21220 at 323.417 kb on - strand, within BPHYT_RS21220 at 323.417 kb on - strand, within BPHYT_RS21220 at 323.417 kb on - strand, within BPHYT_RS21220 at 323.440 kb on + strand, within BPHYT_RS21220 at 323.440 kb on + strand, within BPHYT_RS21220 at 323.441 kb on - strand, within BPHYT_RS21220 at 323.442 kb on + strand, within BPHYT_RS21220 at 323.442 kb on + strand, within BPHYT_RS21220 at 323.545 kb on + strand at 323.545 kb on + strand at 323.545 kb on + strand at 323.545 kb on + strand at 323.545 kb on + strand at 323.546 kb on - strand at 323.546 kb on - strand at 323.627 kb on + strand at 323.627 kb on + strand at 323.628 kb on - strand at 323.628 kb on - strand at 323.670 kb on + strand at 323.914 kb on + strand, within BPHYT_RS21225 at 324.270 kb on + strand, within BPHYT_RS21225 at 324.270 kb on + strand, within BPHYT_RS21225 at 324.270 kb on + strand, within BPHYT_RS21225 at 324.270 kb on + strand, within BPHYT_RS21225 at 324.271 kb on - strand, within BPHYT_RS21225 at 324.271 kb on - strand, within BPHYT_RS21225
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 322,324 + BPHYT_RS21215 0.46 -0.2 322,324 + BPHYT_RS21215 0.46 +0.4 322,324 + BPHYT_RS21215 0.46 -0.2 322,324 + BPHYT_RS21215 0.46 -2.0 322,325 - BPHYT_RS21215 0.46 +0.8 322,325 - BPHYT_RS21215 0.46 +0.1 322,545 + BPHYT_RS21215 0.80 -0.2 322,546 - BPHYT_RS21215 0.80 -2.2 322,546 - BPHYT_RS21215 0.80 +0.0 322,575 + BPHYT_RS21215 0.84 -0.9 322,813 + -0.4 322,813 + +1.4 322,813 + +0.2 322,845 + -1.0 322,846 - -0.6 322,991 + +0.1 323,416 + BPHYT_RS21220 0.71 +0.9 323,416 + BPHYT_RS21220 0.71 -0.4 323,417 - BPHYT_RS21220 0.72 +1.4 323,417 - BPHYT_RS21220 0.72 +2.0 323,417 - BPHYT_RS21220 0.72 -0.3 323,440 + BPHYT_RS21220 0.76 +1.3 323,440 + BPHYT_RS21220 0.76 +0.8 323,441 - BPHYT_RS21220 0.77 +0.6 323,442 + BPHYT_RS21220 0.77 -0.2 323,442 + BPHYT_RS21220 0.77 -0.4 323,545 + +0.3 323,545 + +1.0 323,545 + -0.7 323,545 + -0.6 323,545 + -0.8 323,546 - +0.4 323,546 - +0.4 323,627 + -0.1 323,627 + +1.3 323,628 - +0.2 323,628 - +0.0 323,670 + +1.1 323,914 + BPHYT_RS21225 0.11 +1.8 324,270 + BPHYT_RS21225 0.62 -0.6 324,270 + BPHYT_RS21225 0.62 -0.2 324,270 + BPHYT_RS21225 0.62 -0.0 324,270 + BPHYT_RS21225 0.62 -0.2 324,271 - BPHYT_RS21225 0.63 -0.5 324,271 - BPHYT_RS21225 0.63 -0.1
Or see this region's nucleotide sequence