Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20395 and BPHYT_RS20400 are separated by 258 nucleotides BPHYT_RS20400 and BPHYT_RS20405 are separated by 423 nucleotides
BPHYT_RS20395: BPHYT_RS20395 - short-chain dehydrogenase, at 138,042 to 138,788
_RS20395
BPHYT_RS20400: BPHYT_RS20400 - GntR family transcriptional regulator, at 139,047 to 139,757
_RS20400
BPHYT_RS20405: BPHYT_RS20405 - MFS transporter, at 140,181 to 141,512
_RS20405
Position (kb) 139
140 Strain fitness (log2 ratio) -2
-1
0
1 at 138.289 kb on + strand, within BPHYT_RS20395 at 138.290 kb on - strand, within BPHYT_RS20395 at 138.337 kb on + strand, within BPHYT_RS20395 at 138.338 kb on - strand, within BPHYT_RS20395 at 138.633 kb on + strand, within BPHYT_RS20395 at 138.633 kb on + strand, within BPHYT_RS20395 at 138.634 kb on - strand, within BPHYT_RS20395 at 138.634 kb on - strand, within BPHYT_RS20395 at 138.768 kb on - strand at 138.768 kb on - strand at 139.832 kb on - strand at 139.832 kb on - strand at 139.834 kb on - strand at 139.842 kb on + strand at 139.843 kb on - strand at 140.006 kb on - strand at 140.283 kb on + strand at 140.283 kb on + strand at 140.283 kb on + strand at 140.356 kb on - strand, within BPHYT_RS20405 at 140.430 kb on + strand, within BPHYT_RS20405 at 140.431 kb on - strand, within BPHYT_RS20405 at 140.431 kb on - strand, within BPHYT_RS20405 at 140.520 kb on + strand, within BPHYT_RS20405 at 140.521 kb on - strand, within BPHYT_RS20405 at 140.521 kb on - strand, within BPHYT_RS20405 at 140.521 kb on - strand, within BPHYT_RS20405 at 140.521 kb on - strand, within BPHYT_RS20405
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 138,289 + BPHYT_RS20395 0.33 -0.7 138,290 - BPHYT_RS20395 0.33 +0.5 138,337 + BPHYT_RS20395 0.39 +0.3 138,338 - BPHYT_RS20395 0.40 +0.2 138,633 + BPHYT_RS20395 0.79 -1.8 138,633 + BPHYT_RS20395 0.79 -0.7 138,634 - BPHYT_RS20395 0.79 -2.1 138,634 - BPHYT_RS20395 0.79 -0.5 138,768 - +1.3 138,768 - -1.1 139,832 - +0.4 139,832 - -0.6 139,834 - -0.1 139,842 + -0.2 139,843 - -0.2 140,006 - +0.0 140,283 + -1.6 140,283 + +0.9 140,283 + -0.2 140,356 - BPHYT_RS20405 0.13 +0.3 140,430 + BPHYT_RS20405 0.19 +0.6 140,431 - BPHYT_RS20405 0.19 +0.7 140,431 - BPHYT_RS20405 0.19 +0.1 140,520 + BPHYT_RS20405 0.25 +0.4 140,521 - BPHYT_RS20405 0.26 +0.8 140,521 - BPHYT_RS20405 0.26 -0.2 140,521 - BPHYT_RS20405 0.26 -0.6 140,521 - BPHYT_RS20405 0.26 +1.2
Or see this region's nucleotide sequence