Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS13655 and BPHYT_RS13660 are separated by 58 nucleotides BPHYT_RS13660 and BPHYT_RS13665 are separated by 83 nucleotides BPHYT_RS13665 and BPHYT_RS13670 are separated by 287 nucleotides BPHYT_RS13670 and BPHYT_RS13675 are separated by 2 nucleotides
BPHYT_RS13655: BPHYT_RS13655 - GTP pyrophosphokinase, at 3,111,788 to 3,114,031
_RS13655
BPHYT_RS13660: BPHYT_RS13660 - aminoacrylate peracid reductase, at 3,114,090 to 3,114,443
_RS13660
BPHYT_RS13665: BPHYT_RS13665 - alpha/beta hydrolase, at 3,114,527 to 3,115,441
_RS13665
BPHYT_RS13670: BPHYT_RS13670 - succinyl-CoA:3-ketoacid-CoA transferase, at 3,115,729 to 3,116,370
_RS13670
BPHYT_RS13675: BPHYT_RS13675 - succinyl-CoA:3-ketoacid-CoA transferase, at 3,116,373 to 3,117,077
_RS13675
Position (kb) 3114
3115
3116 Strain fitness (log2 ratio) -1
0
1
2 at 3113.565 kb on + strand, within BPHYT_RS13655 at 3114.011 kb on - strand at 3114.011 kb on - strand at 3114.014 kb on - strand at 3114.025 kb on + strand at 3114.092 kb on - strand at 3114.092 kb on - strand at 3114.244 kb on + strand, within BPHYT_RS13660 at 3114.244 kb on + strand, within BPHYT_RS13660 at 3114.245 kb on - strand, within BPHYT_RS13660 at 3114.245 kb on - strand, within BPHYT_RS13660 at 3114.377 kb on - strand, within BPHYT_RS13660 at 3114.525 kb on + strand at 3114.525 kb on + strand at 3114.525 kb on + strand at 3114.526 kb on - strand at 3114.526 kb on - strand at 3114.528 kb on + strand at 3114.692 kb on + strand, within BPHYT_RS13665 at 3114.970 kb on - strand, within BPHYT_RS13665 at 3114.970 kb on - strand, within BPHYT_RS13665 at 3114.986 kb on + strand, within BPHYT_RS13665 at 3115.156 kb on - strand, within BPHYT_RS13665 at 3115.169 kb on - strand, within BPHYT_RS13665 at 3115.386 kb on + strand at 3115.520 kb on + strand at 3115.520 kb on + strand at 3115.521 kb on - strand at 3115.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 3,113,565 + BPHYT_RS13655 0.79 -0.0 3,114,011 - -0.2 3,114,011 - -1.5 3,114,014 - +1.9 3,114,025 + -0.2 3,114,092 - +0.6 3,114,092 - +0.1 3,114,244 + BPHYT_RS13660 0.44 -1.5 3,114,244 + BPHYT_RS13660 0.44 +0.3 3,114,245 - BPHYT_RS13660 0.44 +0.6 3,114,245 - BPHYT_RS13660 0.44 -0.5 3,114,377 - BPHYT_RS13660 0.81 +0.3 3,114,525 + -0.1 3,114,525 + -0.0 3,114,525 + -0.5 3,114,526 - -1.0 3,114,526 - +0.5 3,114,528 + -0.7 3,114,692 + BPHYT_RS13665 0.18 +1.6 3,114,970 - BPHYT_RS13665 0.48 +0.2 3,114,970 - BPHYT_RS13665 0.48 +1.1 3,114,986 + BPHYT_RS13665 0.50 +0.7 3,115,156 - BPHYT_RS13665 0.69 +0.9 3,115,169 - BPHYT_RS13665 0.70 +0.2 3,115,386 + +0.1 3,115,520 + +0.3 3,115,520 + +0.2 3,115,521 - +0.3 3,115,521 - +1.6
Or see this region's nucleotide sequence