Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS10390 and BPHYT_RS10395 are separated by 18 nucleotides BPHYT_RS10395 and BPHYT_RS10400 are separated by 45 nucleotides BPHYT_RS10400 and BPHYT_RS10405 are separated by 34 nucleotides
BPHYT_RS10390: BPHYT_RS10390 - nitrate ABC transporter substrate-binding protein, at 2,361,524 to 2,362,591
_RS10390
BPHYT_RS10395: BPHYT_RS10395 - sulfonate ABC transporter, at 2,362,610 to 2,363,470
_RS10395
BPHYT_RS10400: BPHYT_RS10400 - taurine ABC transporter permease, at 2,363,516 to 2,364,388
_RS10400
BPHYT_RS10405: BPHYT_RS10405 - sulfonate ABC transporter ATP-binding protein, at 2,364,423 to 2,365,319
_RS10405
Position (kb) 2362
2363
2364 Strain fitness (log2 ratio) -2
-1
0
1 at 2362.122 kb on - strand, within BPHYT_RS10390 at 2362.430 kb on + strand, within BPHYT_RS10390 at 2362.873 kb on + strand, within BPHYT_RS10395 at 2362.873 kb on + strand, within BPHYT_RS10395 at 2363.489 kb on + strand at 2364.066 kb on - strand, within BPHYT_RS10400
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 2,362,122 - BPHYT_RS10390 0.56 +0.1 2,362,430 + BPHYT_RS10390 0.85 -0.5 2,362,873 + BPHYT_RS10395 0.31 +0.5 2,362,873 + BPHYT_RS10395 0.31 -0.2 2,363,489 + +0.5 2,364,066 - BPHYT_RS10400 0.63 -1.8
Or see this region's nucleotide sequence