Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08195

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08190 and BPHYT_RS08195 are separated by 2 nucleotidesBPHYT_RS08195 and BPHYT_RS08200 are separated by 9 nucleotides BPHYT_RS08190: BPHYT_RS08190 - type II secretion system protein, at 1,872,933 to 1,873,961 _RS08190 BPHYT_RS08195: BPHYT_RS08195 - type II secretion system protein, at 1,873,964 to 1,874,974 _RS08195 BPHYT_RS08200: BPHYT_RS08200 - pilus assembly protein, at 1,874,984 to 1,875,838 _RS08200 Position (kb) 1873 1874 1875Strain fitness (log2 ratio) -1 0 1at 1873.845 kb on - strand, within BPHYT_RS08190at 1873.894 kb on - strandat 1873.927 kb on - strandat 1874.321 kb on - strand, within BPHYT_RS08195at 1875.173 kb on + strand, within BPHYT_RS08200at 1875.212 kb on + strand, within BPHYT_RS08200at 1875.212 kb on + strand, within BPHYT_RS08200at 1875.212 kb on + strand, within BPHYT_RS08200

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,873,845 - BPHYT_RS08190 0.89 -0.8
1,873,894 - +1.5
1,873,927 - -1.3
1,874,321 - BPHYT_RS08195 0.35 -0.1
1,875,173 + BPHYT_RS08200 0.22 +1.0
1,875,212 + BPHYT_RS08200 0.27 -1.2
1,875,212 + BPHYT_RS08200 0.27 +0.5
1,875,212 + BPHYT_RS08200 0.27 -1.2

Or see this region's nucleotide sequence