Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03395 and BPHYT_RS03400 are separated by 783 nucleotides BPHYT_RS03400 and BPHYT_RS03405 are separated by 148 nucleotides
BPHYT_RS03395: BPHYT_RS03395 - DNA methyltransferase, at 763,145 to 764,446
_RS03395
BPHYT_RS03400: BPHYT_RS03400 - ATP-dependent DNA helicase RecG, at 765,230 to 767,680
_RS03400
BPHYT_RS03405: BPHYT_RS03405 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 767,829 to 768,887
_RS03405
Position (kb) 765
766
767
768 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 764.271 kb on + strand, within BPHYT_RS03395 at 764.778 kb on + strand at 764.864 kb on - strand at 764.922 kb on - strand at 764.974 kb on - strand at 764.974 kb on - strand at 765.790 kb on - strand, within BPHYT_RS03400 at 765.994 kb on - strand, within BPHYT_RS03400 at 767.696 kb on + strand at 767.696 kb on + strand at 767.696 kb on + strand at 767.697 kb on - strand at 767.697 kb on - strand at 767.697 kb on - strand at 767.771 kb on + strand at 767.771 kb on + strand at 768.288 kb on + strand, within BPHYT_RS03405 at 768.523 kb on - strand, within BPHYT_RS03405
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 764,271 + BPHYT_RS03395 0.86 -0.2 764,778 + -0.1 764,864 - +2.8 764,922 - +0.0 764,974 - +0.1 764,974 - +0.1 765,790 - BPHYT_RS03400 0.23 -0.4 765,994 - BPHYT_RS03400 0.31 -2.0 767,696 + -0.4 767,696 + +0.2 767,696 + -2.0 767,697 - +0.6 767,697 - -0.0 767,697 - -1.0 767,771 + -0.1 767,771 + -0.5 768,288 + BPHYT_RS03405 0.43 -0.8 768,523 - BPHYT_RS03405 0.66 -2.1
Or see this region's nucleotide sequence