Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00410 and BPHYT_RS00415 are separated by 173 nucleotides BPHYT_RS00415 and BPHYT_RS00420 are separated by 892 nucleotides
BPHYT_RS00410: BPHYT_RS00410 - LacI family transcription regulator, at 101,715 to 102,809
_RS00410
BPHYT_RS00415: BPHYT_RS00415 - sugar ABC transporter substrate-binding protein, at 102,983 to 104,251
_RS00415
BPHYT_RS00420: BPHYT_RS00420 - LysR family transcriptional regulator, at 105,144 to 106,013
_RS00420
Position (kb) 102
103
104
105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.066 kb on + strand, within BPHYT_RS00410 at 102.268 kb on + strand, within BPHYT_RS00410 at 102.272 kb on + strand, within BPHYT_RS00410 at 102.272 kb on + strand, within BPHYT_RS00410 at 102.273 kb on - strand, within BPHYT_RS00410 at 102.273 kb on - strand, within BPHYT_RS00410 at 102.273 kb on - strand, within BPHYT_RS00410 at 102.371 kb on - strand, within BPHYT_RS00410 at 102.568 kb on + strand, within BPHYT_RS00410 at 102.569 kb on - strand, within BPHYT_RS00410 at 102.709 kb on - strand at 103.379 kb on + strand, within BPHYT_RS00415 at 103.391 kb on + strand, within BPHYT_RS00415 at 103.392 kb on - strand, within BPHYT_RS00415 at 103.392 kb on - strand, within BPHYT_RS00415 at 103.392 kb on - strand, within BPHYT_RS00415 at 103.707 kb on - strand, within BPHYT_RS00415 at 103.709 kb on - strand, within BPHYT_RS00415 at 103.844 kb on + strand, within BPHYT_RS00415 at 103.844 kb on + strand, within BPHYT_RS00415 at 103.845 kb on - strand, within BPHYT_RS00415 at 103.845 kb on - strand, within BPHYT_RS00415 at 103.855 kb on - strand, within BPHYT_RS00415 at 103.882 kb on + strand, within BPHYT_RS00415 at 103.882 kb on + strand, within BPHYT_RS00415 at 103.883 kb on - strand, within BPHYT_RS00415 at 103.970 kb on - strand, within BPHYT_RS00415 at 103.989 kb on + strand, within BPHYT_RS00415 at 104.138 kb on - strand at 104.439 kb on - strand at 104.439 kb on - strand at 104.661 kb on - strand at 104.725 kb on + strand at 104.726 kb on - strand at 104.797 kb on + strand at 104.797 kb on + strand at 104.835 kb on + strand at 104.836 kb on - strand at 104.863 kb on + strand at 104.877 kb on - strand at 104.877 kb on - strand at 104.877 kb on - strand at 104.880 kb on + strand at 104.881 kb on - strand at 104.888 kb on + strand at 104.889 kb on - strand at 104.906 kb on + strand at 104.907 kb on - strand at 105.060 kb on + strand at 105.208 kb on + strand at 105.208 kb on + strand at 105.208 kb on + strand at 105.209 kb on - strand at 105.209 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 102,066 + BPHYT_RS00410 0.32 -0.1 102,268 + BPHYT_RS00410 0.51 -0.6 102,272 + BPHYT_RS00410 0.51 -0.4 102,272 + BPHYT_RS00410 0.51 -0.3 102,273 - BPHYT_RS00410 0.51 -0.4 102,273 - BPHYT_RS00410 0.51 +0.2 102,273 - BPHYT_RS00410 0.51 -0.9 102,371 - BPHYT_RS00410 0.60 -0.4 102,568 + BPHYT_RS00410 0.78 -0.4 102,569 - BPHYT_RS00410 0.78 -0.0 102,709 - +0.4 103,379 + BPHYT_RS00415 0.31 -0.5 103,391 + BPHYT_RS00415 0.32 -0.3 103,392 - BPHYT_RS00415 0.32 -1.1 103,392 - BPHYT_RS00415 0.32 -1.4 103,392 - BPHYT_RS00415 0.32 -1.5 103,707 - BPHYT_RS00415 0.57 -0.2 103,709 - BPHYT_RS00415 0.57 -0.0 103,844 + BPHYT_RS00415 0.68 -0.1 103,844 + BPHYT_RS00415 0.68 -1.2 103,845 - BPHYT_RS00415 0.68 -0.8 103,845 - BPHYT_RS00415 0.68 +2.4 103,855 - BPHYT_RS00415 0.69 -0.6 103,882 + BPHYT_RS00415 0.71 -0.4 103,882 + BPHYT_RS00415 0.71 +0.3 103,883 - BPHYT_RS00415 0.71 -0.4 103,970 - BPHYT_RS00415 0.78 -1.5 103,989 + BPHYT_RS00415 0.79 -0.2 104,138 - -0.1 104,439 - -0.4 104,439 - -0.6 104,661 - -0.2 104,725 + -0.4 104,726 - +0.4 104,797 + -0.9 104,797 + -0.1 104,835 + +0.3 104,836 - -0.2 104,863 + -0.3 104,877 - -0.3 104,877 - -0.3 104,877 - -1.1 104,880 + +0.2 104,881 - +0.5 104,888 + -0.4 104,889 - -0.4 104,906 + +0.3 104,907 - -0.7 105,060 + -0.1 105,208 + -0.3 105,208 + +1.2 105,208 + -0.2 105,209 - -1.8 105,209 - -0.9
Or see this region's nucleotide sequence