Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28490 and BPHYT_RS28495 are separated by 89 nucleotides BPHYT_RS28495 and BPHYT_RS28500 are separated by 225 nucleotides
BPHYT_RS28490: BPHYT_RS28490 - MFS transporter, at 1,946,080 to 1,947,465
_RS28490
BPHYT_RS28495: BPHYT_RS28495 - peptidase M24, at 1,947,555 to 1,948,721
_RS28495
BPHYT_RS28500: BPHYT_RS28500 - LysR family transcriptional regulator, at 1,948,947 to 1,949,903
_RS28500
Position (kb) 1947
1948
1949 Strain fitness (log2 ratio) -1
0
1 at 1946.652 kb on - strand, within BPHYT_RS28490 at 1946.685 kb on + strand, within BPHYT_RS28490 at 1946.891 kb on + strand, within BPHYT_RS28490 at 1947.119 kb on + strand, within BPHYT_RS28490 at 1947.189 kb on + strand, within BPHYT_RS28490 at 1947.460 kb on - strand at 1947.460 kb on - strand at 1947.460 kb on - strand at 1947.460 kb on - strand at 1947.536 kb on + strand at 1947.620 kb on + strand at 1947.621 kb on - strand at 1947.941 kb on - strand, within BPHYT_RS28495 at 1947.971 kb on - strand, within BPHYT_RS28495 at 1947.971 kb on - strand, within BPHYT_RS28495 at 1948.050 kb on - strand, within BPHYT_RS28495 at 1948.343 kb on + strand, within BPHYT_RS28495 at 1948.343 kb on + strand, within BPHYT_RS28495 at 1948.346 kb on - strand, within BPHYT_RS28495 at 1948.428 kb on - strand, within BPHYT_RS28495 at 1948.570 kb on + strand, within BPHYT_RS28495 at 1948.680 kb on - strand at 1948.828 kb on + strand at 1948.829 kb on - strand at 1948.829 kb on - strand at 1948.829 kb on - strand at 1948.831 kb on + strand at 1948.831 kb on + strand at 1948.831 kb on + strand at 1948.832 kb on - strand at 1949.451 kb on + strand, within BPHYT_RS28500 at 1949.452 kb on - strand, within BPHYT_RS28500
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,946,652 - BPHYT_RS28490 0.41 -0.5 1,946,685 + BPHYT_RS28490 0.44 +0.0 1,946,891 + BPHYT_RS28490 0.59 +0.3 1,947,119 + BPHYT_RS28490 0.75 -0.6 1,947,189 + BPHYT_RS28490 0.80 +0.3 1,947,460 - +0.5 1,947,460 - -0.4 1,947,460 - +0.0 1,947,460 - -1.1 1,947,536 + +0.0 1,947,620 + +1.0 1,947,621 - -0.6 1,947,941 - BPHYT_RS28495 0.33 +0.4 1,947,971 - BPHYT_RS28495 0.36 -0.4 1,947,971 - BPHYT_RS28495 0.36 -0.7 1,948,050 - BPHYT_RS28495 0.42 +1.1 1,948,343 + BPHYT_RS28495 0.68 +0.3 1,948,343 + BPHYT_RS28495 0.68 +0.2 1,948,346 - BPHYT_RS28495 0.68 +0.7 1,948,428 - BPHYT_RS28495 0.75 +0.3 1,948,570 + BPHYT_RS28495 0.87 +0.0 1,948,680 - -0.4 1,948,828 + -1.0 1,948,829 - -0.2 1,948,829 - +0.0 1,948,829 - -0.2 1,948,831 + -0.4 1,948,831 + -0.0 1,948,831 + -0.4 1,948,832 - -0.7 1,949,451 + BPHYT_RS28500 0.53 +0.0 1,949,452 - BPHYT_RS28500 0.53 +0.4
Or see this region's nucleotide sequence