Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27560

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27555 and BPHYT_RS27560 are separated by 265 nucleotidesBPHYT_RS27560 and BPHYT_RS27565 are separated by 296 nucleotides BPHYT_RS27555: BPHYT_RS27555 - peptidase, at 1,755,154 to 1,755,750 _RS27555 BPHYT_RS27560: BPHYT_RS27560 - histidine kinase, at 1,756,016 to 1,757,128 _RS27560 BPHYT_RS27565: BPHYT_RS27565 - hydrolase, at 1,757,425 to 1,757,904 _RS27565 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -1 0 1 2 3 4at 1755.230 kb on + strand, within BPHYT_RS27555at 1755.281 kb on + strand, within BPHYT_RS27555at 1755.299 kb on - strand, within BPHYT_RS27555at 1755.352 kb on + strand, within BPHYT_RS27555at 1755.352 kb on + strand, within BPHYT_RS27555at 1755.352 kb on + strand, within BPHYT_RS27555at 1755.506 kb on + strand, within BPHYT_RS27555at 1755.507 kb on - strand, within BPHYT_RS27555at 1755.837 kb on + strandat 1756.216 kb on - strand, within BPHYT_RS27560at 1756.306 kb on - strand, within BPHYT_RS27560at 1757.430 kb on + strandat 1757.595 kb on + strand, within BPHYT_RS27565at 1757.596 kb on - strand, within BPHYT_RS27565at 1757.681 kb on - strand, within BPHYT_RS27565at 1757.795 kb on + strand, within BPHYT_RS27565at 1757.795 kb on + strand, within BPHYT_RS27565at 1757.795 kb on + strand, within BPHYT_RS27565at 1757.813 kb on + strand, within BPHYT_RS27565

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,755,230 + BPHYT_RS27555 0.13 +4.4
1,755,281 + BPHYT_RS27555 0.21 -0.2
1,755,299 - BPHYT_RS27555 0.24 -0.3
1,755,352 + BPHYT_RS27555 0.33 +0.2
1,755,352 + BPHYT_RS27555 0.33 -0.6
1,755,352 + BPHYT_RS27555 0.33 -0.6
1,755,506 + BPHYT_RS27555 0.59 -0.1
1,755,507 - BPHYT_RS27555 0.59 -0.5
1,755,837 + -0.1
1,756,216 - BPHYT_RS27560 0.18 -0.4
1,756,306 - BPHYT_RS27560 0.26 +1.3
1,757,430 + -0.4
1,757,595 + BPHYT_RS27565 0.35 -0.2
1,757,596 - BPHYT_RS27565 0.36 -1.3
1,757,681 - BPHYT_RS27565 0.53 +2.0
1,757,795 + BPHYT_RS27565 0.77 -0.5
1,757,795 + BPHYT_RS27565 0.77 +0.7
1,757,795 + BPHYT_RS27565 0.77 +0.3
1,757,813 + BPHYT_RS27565 0.81 -0.4

Or see this region's nucleotide sequence