Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26825 and BPHYT_RS26830 are separated by 77 nucleotides BPHYT_RS26830 and BPHYT_RS26835 are separated by 83 nucleotides BPHYT_RS26835 and BPHYT_RS26840 are separated by 289 nucleotides
BPHYT_RS26825: BPHYT_RS26825 - quercetin 2,3-dioxygenase, at 1,590,319 to 1,591,044
_RS26825
BPHYT_RS26830: BPHYT_RS26830 - membrane protein, at 1,591,122 to 1,591,535
_RS26830
BPHYT_RS26835: BPHYT_RS26835 - alkane 1-monooxygenase, at 1,591,619 to 1,592,773
_RS26835
BPHYT_RS26840: BPHYT_RS26840 - NADH dehydrogenase, at 1,593,063 to 1,594,655
_RS26840
Position (kb) 1591
1592
1593 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1590.628 kb on + strand, within BPHYT_RS26825 at 1590.629 kb on - strand, within BPHYT_RS26825 at 1590.815 kb on - strand, within BPHYT_RS26825 at 1591.063 kb on + strand at 1591.063 kb on + strand at 1591.064 kb on - strand at 1591.130 kb on + strand at 1591.443 kb on - strand, within BPHYT_RS26830 at 1591.443 kb on - strand, within BPHYT_RS26830 at 1591.443 kb on - strand, within BPHYT_RS26830 at 1591.443 kb on - strand, within BPHYT_RS26830 at 1591.455 kb on + strand, within BPHYT_RS26830 at 1591.515 kb on + strand at 1591.744 kb on - strand, within BPHYT_RS26835 at 1592.004 kb on + strand, within BPHYT_RS26835 at 1592.428 kb on - strand, within BPHYT_RS26835 at 1592.526 kb on + strand, within BPHYT_RS26835 at 1592.527 kb on - strand, within BPHYT_RS26835 at 1592.702 kb on + strand at 1592.702 kb on + strand at 1592.720 kb on + strand at 1592.871 kb on + strand at 1592.871 kb on + strand at 1592.871 kb on + strand at 1592.871 kb on + strand at 1592.874 kb on - strand at 1592.903 kb on + strand at 1593.051 kb on + strand at 1593.654 kb on - strand, within BPHYT_RS26840 at 1593.654 kb on - strand, within BPHYT_RS26840
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,590,628 + BPHYT_RS26825 0.43 +1.4 1,590,629 - BPHYT_RS26825 0.43 -2.1 1,590,815 - BPHYT_RS26825 0.68 -1.5 1,591,063 + -1.3 1,591,063 + -0.2 1,591,064 - -0.2 1,591,130 + -1.9 1,591,443 - BPHYT_RS26830 0.78 +0.4 1,591,443 - BPHYT_RS26830 0.78 +0.2 1,591,443 - BPHYT_RS26830 0.78 +0.8 1,591,443 - BPHYT_RS26830 0.78 -0.9 1,591,455 + BPHYT_RS26830 0.80 -1.1 1,591,515 + -0.1 1,591,744 - BPHYT_RS26835 0.11 +0.4 1,592,004 + BPHYT_RS26835 0.33 -0.8 1,592,428 - BPHYT_RS26835 0.70 -0.4 1,592,526 + BPHYT_RS26835 0.79 -0.1 1,592,527 - BPHYT_RS26835 0.79 -0.5 1,592,702 + +1.0 1,592,702 + +2.0 1,592,720 + -1.3 1,592,871 + -0.6 1,592,871 + -1.0 1,592,871 + +0.0 1,592,871 + -0.9 1,592,874 - -0.4 1,592,903 + +0.9 1,593,051 + -0.8 1,593,654 - BPHYT_RS26840 0.37 -0.2 1,593,654 - BPHYT_RS26840 0.37 +0.7
Or see this region's nucleotide sequence