Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26220

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26210 and BPHYT_RS26215 are separated by 93 nucleotidesBPHYT_RS26215 and BPHYT_RS26220 are separated by 15 nucleotidesBPHYT_RS26220 and BPHYT_RS26225 overlap by 10 nucleotidesBPHYT_RS26225 and BPHYT_RS26230 are separated by 77 nucleotides BPHYT_RS26210: BPHYT_RS26210 - ankyrin, at 1,453,231 to 1,453,767 _RS26210 BPHYT_RS26215: BPHYT_RS26215 - haloacid dehalogenase, at 1,453,861 to 1,454,553 _RS26215 BPHYT_RS26220: BPHYT_RS26220 - 6-phosphogluconate dehydrogenase, at 1,454,569 to 1,455,606 _RS26220 BPHYT_RS26225: BPHYT_RS26225 - hypothetical protein, at 1,455,597 to 1,455,917 _RS26225 BPHYT_RS26230: BPHYT_RS26230 - MFS transporter, at 1,455,995 to 1,457,329 _RS26230 Position (kb) 1454 1455 1456Strain fitness (log2 ratio) -1 0 1 2at 1454.066 kb on + strand, within BPHYT_RS26215at 1454.067 kb on - strand, within BPHYT_RS26215at 1454.451 kb on + strand, within BPHYT_RS26215at 1454.451 kb on + strand, within BPHYT_RS26215at 1454.518 kb on + strandat 1454.786 kb on + strand, within BPHYT_RS26220at 1454.907 kb on - strand, within BPHYT_RS26220at 1455.002 kb on + strand, within BPHYT_RS26220at 1455.003 kb on - strand, within BPHYT_RS26220at 1455.219 kb on - strand, within BPHYT_RS26220at 1455.266 kb on + strand, within BPHYT_RS26220at 1455.267 kb on - strand, within BPHYT_RS26220at 1455.267 kb on - strand, within BPHYT_RS26220at 1455.320 kb on + strand, within BPHYT_RS26220at 1455.528 kb on + strandat 1455.668 kb on + strand, within BPHYT_RS26225at 1455.945 kb on + strandat 1456.276 kb on - strand, within BPHYT_RS26230at 1456.276 kb on - strand, within BPHYT_RS26230at 1456.276 kb on - strand, within BPHYT_RS26230at 1456.534 kb on + strand, within BPHYT_RS26230

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,454,066 + BPHYT_RS26215 0.30 +0.7
1,454,067 - BPHYT_RS26215 0.30 -0.3
1,454,451 + BPHYT_RS26215 0.85 -0.7
1,454,451 + BPHYT_RS26215 0.85 +1.4
1,454,518 + -1.3
1,454,786 + BPHYT_RS26220 0.21 +0.1
1,454,907 - BPHYT_RS26220 0.33 -0.5
1,455,002 + BPHYT_RS26220 0.42 +1.5
1,455,003 - BPHYT_RS26220 0.42 +0.4
1,455,219 - BPHYT_RS26220 0.63 -0.1
1,455,266 + BPHYT_RS26220 0.67 -0.3
1,455,267 - BPHYT_RS26220 0.67 +0.5
1,455,267 - BPHYT_RS26220 0.67 +0.7
1,455,320 + BPHYT_RS26220 0.72 -0.4
1,455,528 + +2.3
1,455,668 + BPHYT_RS26225 0.22 -1.5
1,455,945 + +0.0
1,456,276 - BPHYT_RS26230 0.21 +0.3
1,456,276 - BPHYT_RS26230 0.21 -0.2
1,456,276 - BPHYT_RS26230 0.21 -0.5
1,456,534 + BPHYT_RS26230 0.40 -0.4

Or see this region's nucleotide sequence