Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26210 and BPHYT_RS26215 are separated by 93 nucleotides BPHYT_RS26215 and BPHYT_RS26220 are separated by 15 nucleotides
BPHYT_RS26210: BPHYT_RS26210 - ankyrin, at 1,453,231 to 1,453,767
_RS26210
BPHYT_RS26215: BPHYT_RS26215 - haloacid dehalogenase, at 1,453,861 to 1,454,553
_RS26215
BPHYT_RS26220: BPHYT_RS26220 - 6-phosphogluconate dehydrogenase, at 1,454,569 to 1,455,606
_RS26220
Position (kb) 1453
1454
1455 Strain fitness (log2 ratio) -1
0
1
2 at 1452.862 kb on - strand at 1452.862 kb on - strand at 1452.875 kb on + strand at 1453.249 kb on - strand at 1453.421 kb on - strand, within BPHYT_RS26210 at 1454.066 kb on + strand, within BPHYT_RS26215 at 1454.067 kb on - strand, within BPHYT_RS26215 at 1454.451 kb on + strand, within BPHYT_RS26215 at 1454.451 kb on + strand, within BPHYT_RS26215 at 1454.518 kb on + strand at 1454.786 kb on + strand, within BPHYT_RS26220 at 1454.907 kb on - strand, within BPHYT_RS26220 at 1455.002 kb on + strand, within BPHYT_RS26220 at 1455.003 kb on - strand, within BPHYT_RS26220 at 1455.219 kb on - strand, within BPHYT_RS26220 at 1455.266 kb on + strand, within BPHYT_RS26220 at 1455.267 kb on - strand, within BPHYT_RS26220 at 1455.267 kb on - strand, within BPHYT_RS26220 at 1455.320 kb on + strand, within BPHYT_RS26220 at 1455.528 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,452,862 - -0.0 1,452,862 - +0.6 1,452,875 + +0.1 1,453,249 - -0.4 1,453,421 - BPHYT_RS26210 0.35 -0.9 1,454,066 + BPHYT_RS26215 0.30 +0.7 1,454,067 - BPHYT_RS26215 0.30 -0.3 1,454,451 + BPHYT_RS26215 0.85 -0.7 1,454,451 + BPHYT_RS26215 0.85 +1.4 1,454,518 + -1.3 1,454,786 + BPHYT_RS26220 0.21 +0.1 1,454,907 - BPHYT_RS26220 0.33 -0.5 1,455,002 + BPHYT_RS26220 0.42 +1.5 1,455,003 - BPHYT_RS26220 0.42 +0.4 1,455,219 - BPHYT_RS26220 0.63 -0.1 1,455,266 + BPHYT_RS26220 0.67 -0.3 1,455,267 - BPHYT_RS26220 0.67 +0.5 1,455,267 - BPHYT_RS26220 0.67 +0.7 1,455,320 + BPHYT_RS26220 0.72 -0.4 1,455,528 + +2.3
Or see this region's nucleotide sequence