Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25140 and BPHYT_RS25145 are separated by 120 nucleotides BPHYT_RS25145 and BPHYT_RS25150 are separated by 17 nucleotides BPHYT_RS25150 and BPHYT_RS25155 are separated by 154 nucleotides
BPHYT_RS25140: BPHYT_RS25140 - hypothetical protein, at 1,212,655 to 1,213,164
_RS25140
BPHYT_RS25145: BPHYT_RS25145 - cupin, at 1,213,285 to 1,213,686
_RS25145
BPHYT_RS25150: BPHYT_RS25150 - class C beta-lactamase, at 1,213,704 to 1,214,870
_RS25150
BPHYT_RS25155: BPHYT_RS25155 - oxygen-dependent choline dehydrogenase, at 1,215,025 to 1,216,710
_RS25155
Position (kb) 1213
1214
1215 Strain fitness (log2 ratio) -2
-1
0
1 at 1213.031 kb on - strand, within BPHYT_RS25140 at 1213.082 kb on + strand, within BPHYT_RS25140 at 1213.193 kb on + strand at 1213.240 kb on - strand at 1213.305 kb on + strand at 1213.305 kb on + strand at 1213.373 kb on - strand, within BPHYT_RS25145 at 1213.396 kb on - strand, within BPHYT_RS25145 at 1213.473 kb on - strand, within BPHYT_RS25145 at 1213.740 kb on - strand at 1213.741 kb on + strand at 1214.137 kb on + strand, within BPHYT_RS25150 at 1214.194 kb on + strand, within BPHYT_RS25150 at 1214.240 kb on - strand, within BPHYT_RS25150 at 1214.681 kb on - strand, within BPHYT_RS25150 at 1215.596 kb on + strand, within BPHYT_RS25155
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 1,213,031 - BPHYT_RS25140 0.74 -1.3 1,213,082 + BPHYT_RS25140 0.84 +0.6 1,213,193 + -0.0 1,213,240 - -1.6 1,213,305 + +1.4 1,213,305 + -0.4 1,213,373 - BPHYT_RS25145 0.22 -0.2 1,213,396 - BPHYT_RS25145 0.28 -1.4 1,213,473 - BPHYT_RS25145 0.47 +0.0 1,213,740 - -0.3 1,213,741 + -2.2 1,214,137 + BPHYT_RS25150 0.37 +0.4 1,214,194 + BPHYT_RS25150 0.42 -0.6 1,214,240 - BPHYT_RS25150 0.46 -1.2 1,214,681 - BPHYT_RS25150 0.84 -1.0 1,215,596 + BPHYT_RS25155 0.34 +1.6
Or see this region's nucleotide sequence