Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22740

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22730 and BPHYT_RS22735 are separated by 30 nucleotidesBPHYT_RS22735 and BPHYT_RS22740 are separated by 19 nucleotidesBPHYT_RS22740 and BPHYT_RS22745 are separated by 92 nucleotides BPHYT_RS22730: BPHYT_RS22730 - serine/threonine kinase, at 656,785 to 658,011 _RS22730 BPHYT_RS22735: BPHYT_RS22735 - sugar ABC transporter ATP-binding protein, at 658,042 to 658,839 _RS22735 BPHYT_RS22740: BPHYT_RS22740 - ABC transporter permease, at 658,859 to 659,845 _RS22740 BPHYT_RS22745: BPHYT_RS22745 - sugar ABC transporter, at 659,938 to 660,942 _RS22745 Position (kb) 658 659 660Strain fitness (log2 ratio) -2 -1 0 1at 658.562 kb on - strand, within BPHYT_RS22735at 658.562 kb on - strand, within BPHYT_RS22735at 659.164 kb on - strand, within BPHYT_RS22740at 659.236 kb on - strand, within BPHYT_RS22740at 659.546 kb on + strand, within BPHYT_RS22740at 659.926 kb on - strandat 660.068 kb on + strand, within BPHYT_RS22745at 660.488 kb on + strand, within BPHYT_RS22745

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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658,562 - BPHYT_RS22735 0.65 -0.2
658,562 - BPHYT_RS22735 0.65 -1.8
659,164 - BPHYT_RS22740 0.31 -1.1
659,236 - BPHYT_RS22740 0.38 -0.2
659,546 + BPHYT_RS22740 0.70 -1.5
659,926 - -0.7
660,068 + BPHYT_RS22745 0.13 -1.7
660,488 + BPHYT_RS22745 0.55 +0.6

Or see this region's nucleotide sequence