Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22310 and BPHYT_RS22315 are separated by 185 nucleotides BPHYT_RS22315 and BPHYT_RS22320 are separated by 140 nucleotides BPHYT_RS22320 and BPHYT_RS22325 are separated by 102 nucleotides
BPHYT_RS22310: BPHYT_RS22310 - hypothetical protein, at 559,951 to 560,271
_RS22310
BPHYT_RS22315: BPHYT_RS22315 - hypothetical protein, at 560,457 to 560,654
_RS22315
BPHYT_RS22320: BPHYT_RS22320 - hypothetical protein, at 560,795 to 561,532
_RS22320
BPHYT_RS22325: BPHYT_RS22325 - histidine kinase, at 561,635 to 563,134
_RS22325
Position (kb) 560
561
562 Strain fitness (log2 ratio) -1
0
1
2
3 at 560.277 kb on + strand at 560.278 kb on - strand at 560.297 kb on + strand at 560.345 kb on - strand at 560.399 kb on + strand at 560.748 kb on + strand at 561.161 kb on - strand, within BPHYT_RS22320 at 561.413 kb on - strand, within BPHYT_RS22320 at 561.413 kb on - strand, within BPHYT_RS22320 at 561.440 kb on + strand, within BPHYT_RS22320 at 561.440 kb on + strand, within BPHYT_RS22320 at 561.555 kb on + strand at 561.728 kb on + strand at 562.313 kb on - strand, within BPHYT_RS22325
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 560,277 + -1.4 560,278 - -0.3 560,297 + +1.0 560,345 - -1.0 560,399 + -0.8 560,748 + +0.9 561,161 - BPHYT_RS22320 0.50 +0.9 561,413 - BPHYT_RS22320 0.84 +2.9 561,413 - BPHYT_RS22320 0.84 +1.2 561,440 + BPHYT_RS22320 0.87 +1.2 561,440 + BPHYT_RS22320 0.87 +0.3 561,555 + +0.4 561,728 + +0.3 562,313 - BPHYT_RS22325 0.45 +0.3
Or see this region's nucleotide sequence