Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21345 and BPHYT_RS21350 are separated by 27 nucleotides BPHYT_RS21350 and BPHYT_RS21355 are separated by 225 nucleotides
BPHYT_RS21345: BPHYT_RS21345 - membrane protein, at 347,247 to 348,266
_RS21345
BPHYT_RS21350: BPHYT_RS21350 - ADP-glucose pyrophosphorylase, at 348,294 to 349,058
_RS21350
BPHYT_RS21355: BPHYT_RS21355 - major facilitator transporter, at 349,284 to 350,687
_RS21355
Position (kb) 348
349
350 Strain fitness (log2 ratio) -2
-1
0
1 at 348.282 kb on - strand at 348.865 kb on - strand, within BPHYT_RS21350 at 348.929 kb on + strand, within BPHYT_RS21350 at 349.238 kb on + strand at 349.440 kb on + strand, within BPHYT_RS21355 at 349.440 kb on + strand, within BPHYT_RS21355 at 349.441 kb on - strand, within BPHYT_RS21355 at 349.441 kb on - strand, within BPHYT_RS21355 at 349.441 kb on - strand, within BPHYT_RS21355 at 349.441 kb on - strand, within BPHYT_RS21355 at 349.693 kb on - strand, within BPHYT_RS21355 at 349.714 kb on + strand, within BPHYT_RS21355 at 349.715 kb on - strand, within BPHYT_RS21355 at 349.758 kb on + strand, within BPHYT_RS21355 at 349.758 kb on + strand, within BPHYT_RS21355 at 349.758 kb on + strand, within BPHYT_RS21355 at 349.758 kb on + strand, within BPHYT_RS21355 at 349.759 kb on - strand, within BPHYT_RS21355 at 349.759 kb on - strand, within BPHYT_RS21355 at 349.759 kb on - strand, within BPHYT_RS21355 at 349.759 kb on - strand, within BPHYT_RS21355 at 349.759 kb on - strand at 349.759 kb on - strand, within BPHYT_RS21355 at 349.988 kb on - strand, within BPHYT_RS21355 at 350.013 kb on + strand, within BPHYT_RS21355
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 348,282 - +0.9 348,865 - BPHYT_RS21350 0.75 -2.1 348,929 + BPHYT_RS21350 0.83 -0.5 349,238 + -0.5 349,440 + BPHYT_RS21355 0.11 +0.6 349,440 + BPHYT_RS21355 0.11 +0.5 349,441 - BPHYT_RS21355 0.11 -0.1 349,441 - BPHYT_RS21355 0.11 -0.4 349,441 - BPHYT_RS21355 0.11 -1.1 349,441 - BPHYT_RS21355 0.11 -0.4 349,693 - BPHYT_RS21355 0.29 -0.2 349,714 + BPHYT_RS21355 0.31 +0.2 349,715 - BPHYT_RS21355 0.31 -0.2 349,758 + BPHYT_RS21355 0.34 -0.2 349,758 + BPHYT_RS21355 0.34 +0.1 349,758 + BPHYT_RS21355 0.34 -0.3 349,758 + BPHYT_RS21355 0.34 -0.9 349,759 - BPHYT_RS21355 0.34 -1.7 349,759 - BPHYT_RS21355 0.34 +0.4 349,759 - BPHYT_RS21355 0.34 -0.2 349,759 - BPHYT_RS21355 0.34 +0.6 349,759 - +0.9 349,759 - BPHYT_RS21355 0.34 -0.8 349,988 - BPHYT_RS21355 0.50 +0.4 350,013 + BPHYT_RS21355 0.52 -0.0
Or see this region's nucleotide sequence