Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20905 and BPHYT_RS20910 are separated by 136 nucleotides BPHYT_RS20910 and BPHYT_RS20915 are separated by 24 nucleotides
BPHYT_RS20905: BPHYT_RS20905 - hypothetical protein, at 251,525 to 252,028
_RS20905
BPHYT_RS20910: BPHYT_RS20910 - oxidoreductase, at 252,165 to 254,402
_RS20910
BPHYT_RS20915: BPHYT_RS20915 - hypothetical protein, at 254,427 to 255,434
_RS20915
Position (kb) 252
253
254
255 Strain fitness (log2 ratio) -1
0
1
2 at 251.401 kb on - strand at 251.704 kb on - strand, within BPHYT_RS20905 at 251.975 kb on + strand, within BPHYT_RS20905 at 251.975 kb on + strand, within BPHYT_RS20905 at 252.119 kb on + strand at 252.122 kb on + strand at 252.128 kb on - strand at 252.428 kb on - strand, within BPHYT_RS20910 at 252.428 kb on - strand, within BPHYT_RS20910 at 252.998 kb on - strand, within BPHYT_RS20910 at 253.498 kb on + strand, within BPHYT_RS20910 at 253.872 kb on + strand, within BPHYT_RS20910 at 253.873 kb on - strand, within BPHYT_RS20910 at 253.876 kb on + strand, within BPHYT_RS20910 at 253.877 kb on - strand, within BPHYT_RS20910 at 253.977 kb on + strand, within BPHYT_RS20910 at 254.045 kb on + strand, within BPHYT_RS20910 at 254.077 kb on + strand, within BPHYT_RS20910 at 254.078 kb on - strand, within BPHYT_RS20910 at 254.309 kb on + strand at 254.397 kb on - strand at 254.707 kb on + strand, within BPHYT_RS20915 at 255.056 kb on - strand, within BPHYT_RS20915
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 251,401 - +1.4 251,704 - BPHYT_RS20905 0.36 -0.2 251,975 + BPHYT_RS20905 0.89 -0.2 251,975 + BPHYT_RS20905 0.89 +2.5 252,119 + -0.6 252,122 + -0.7 252,128 - -0.6 252,428 - BPHYT_RS20910 0.12 -0.4 252,428 - BPHYT_RS20910 0.12 +0.0 252,998 - BPHYT_RS20910 0.37 +0.1 253,498 + BPHYT_RS20910 0.60 -0.7 253,872 + BPHYT_RS20910 0.76 -1.3 253,873 - BPHYT_RS20910 0.76 -0.3 253,876 + BPHYT_RS20910 0.76 +0.1 253,877 - BPHYT_RS20910 0.76 -1.0 253,977 + BPHYT_RS20910 0.81 -0.0 254,045 + BPHYT_RS20910 0.84 -0.1 254,077 + BPHYT_RS20910 0.85 +1.2 254,078 - BPHYT_RS20910 0.85 +0.4 254,309 + +0.6 254,397 - +0.5 254,707 + BPHYT_RS20915 0.28 +1.8 255,056 - BPHYT_RS20915 0.62 +1.4
Or see this region's nucleotide sequence