Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20125 and BPHYT_RS20130 are separated by 826 nucleotides BPHYT_RS20130 and BPHYT_RS20135 are separated by 196 nucleotides BPHYT_RS20135 and BPHYT_RS20140 are separated by 37 nucleotides
BPHYT_RS20125: BPHYT_RS20125 - histidine kinase, at 58,296 to 58,511
_RS20125
BPHYT_RS20130: BPHYT_RS20130 - diguanylate phosphodiesterase, at 59,338 to 60,105
_RS20130
BPHYT_RS20135: BPHYT_RS20135 - UDP-N-acetyl-D-mannosamine transferase, at 60,302 to 61,060
_RS20135
BPHYT_RS20140: BPHYT_RS20140 - hypothetical protein, at 61,098 to 62,264
_RS20140
Position (kb) 59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 58.696 kb on - strand at 58.897 kb on + strand at 58.898 kb on - strand at 58.944 kb on - strand at 59.046 kb on - strand at 59.146 kb on - strand at 59.159 kb on + strand at 59.160 kb on - strand at 59.175 kb on + strand at 59.230 kb on + strand at 59.243 kb on - strand at 59.721 kb on + strand, within BPHYT_RS20130 at 59.733 kb on - strand, within BPHYT_RS20130 at 59.748 kb on - strand, within BPHYT_RS20130 at 60.135 kb on - strand at 60.135 kb on - strand at 60.401 kb on - strand, within BPHYT_RS20135 at 60.628 kb on + strand, within BPHYT_RS20135 at 60.855 kb on - strand, within BPHYT_RS20135 at 60.875 kb on + strand, within BPHYT_RS20135 at 60.875 kb on + strand, within BPHYT_RS20135
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 58,696 - -0.3 58,897 + -0.3 58,898 - +1.6 58,944 - +0.2 59,046 - -0.9 59,146 - -0.9 59,159 + +0.5 59,160 - +0.4 59,175 + +0.1 59,230 + +0.3 59,243 - +0.8 59,721 + BPHYT_RS20130 0.50 -0.5 59,733 - BPHYT_RS20130 0.51 -1.8 59,748 - BPHYT_RS20130 0.53 -1.9 60,135 - -0.0 60,135 - -0.6 60,401 - BPHYT_RS20135 0.13 +0.7 60,628 + BPHYT_RS20135 0.43 -2.8 60,855 - BPHYT_RS20135 0.73 -1.0 60,875 + BPHYT_RS20135 0.75 +0.1 60,875 + BPHYT_RS20135 0.75 +0.4
Or see this region's nucleotide sequence