Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19735 and BPHYT_RS19740 are separated by 454 nucleotides BPHYT_RS19740 and BPHYT_RS19745 are separated by 283 nucleotides BPHYT_RS19745 and BPHYT_RS19750 are separated by 105 nucleotides
BPHYT_RS19735: BPHYT_RS19735 - hypothetical protein, at 4,441,750 to 4,442,088
_RS19735
BPHYT_RS19740: BPHYT_RS19740 - GCN5 family N-acetyltransferase, at 4,442,543 to 4,443,085
_RS19740
BPHYT_RS19745: BPHYT_RS19745 - membrane protein, at 4,443,369 to 4,443,548
_RS19745
BPHYT_RS19750: BPHYT_RS19750 - hypothetical protein, at 4,443,654 to 4,443,851
_RS19750
Position (kb) 4442
4443
4444 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4441.637 kb on + strand at 4441.682 kb on - strand at 4441.751 kb on + strand at 4441.792 kb on - strand, within BPHYT_RS19735 at 4441.953 kb on + strand, within BPHYT_RS19735 at 4441.973 kb on + strand, within BPHYT_RS19735 at 4442.125 kb on - strand at 4442.125 kb on - strand at 4442.125 kb on - strand at 4442.128 kb on + strand at 4442.129 kb on - strand at 4442.129 kb on - strand at 4442.266 kb on + strand at 4442.343 kb on + strand at 4442.610 kb on + strand, within BPHYT_RS19740 at 4442.611 kb on - strand, within BPHYT_RS19740 at 4442.673 kb on + strand, within BPHYT_RS19740 at 4442.715 kb on + strand, within BPHYT_RS19740 at 4442.716 kb on - strand, within BPHYT_RS19740 at 4442.748 kb on + strand, within BPHYT_RS19740 at 4442.839 kb on + strand, within BPHYT_RS19740 at 4442.840 kb on - strand, within BPHYT_RS19740 at 4442.840 kb on - strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.841 kb on + strand, within BPHYT_RS19740 at 4442.842 kb on - strand, within BPHYT_RS19740 at 4442.842 kb on - strand, within BPHYT_RS19740 at 4442.985 kb on + strand, within BPHYT_RS19740 at 4443.152 kb on + strand at 4443.211 kb on - strand at 4443.215 kb on + strand at 4443.216 kb on - strand at 4443.220 kb on + strand at 4443.220 kb on + strand at 4443.220 kb on + strand at 4443.220 kb on + strand at 4443.334 kb on - strand at 4443.617 kb on - strand at 4444.043 kb on + strand at 4444.043 kb on + strand at 4444.044 kb on - strand at 4444.044 kb on - strand at 4444.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,441,637 + -0.7 4,441,682 - +0.9 4,441,751 + -0.6 4,441,792 - BPHYT_RS19735 0.12 +0.7 4,441,953 + BPHYT_RS19735 0.60 +0.2 4,441,973 + BPHYT_RS19735 0.66 +4.5 4,442,125 - +0.2 4,442,125 - -0.4 4,442,125 - -0.1 4,442,128 + -1.4 4,442,129 - -0.5 4,442,129 - +0.5 4,442,266 + -0.6 4,442,343 + +1.1 4,442,610 + BPHYT_RS19740 0.12 -0.4 4,442,611 - BPHYT_RS19740 0.13 -1.0 4,442,673 + BPHYT_RS19740 0.24 -2.5 4,442,715 + BPHYT_RS19740 0.32 -0.5 4,442,716 - BPHYT_RS19740 0.32 -1.6 4,442,748 + BPHYT_RS19740 0.38 -0.6 4,442,839 + BPHYT_RS19740 0.55 -0.2 4,442,840 - BPHYT_RS19740 0.55 -0.5 4,442,840 - BPHYT_RS19740 0.55 -0.5 4,442,841 + BPHYT_RS19740 0.55 +0.2 4,442,841 + BPHYT_RS19740 0.55 -0.5 4,442,841 + BPHYT_RS19740 0.55 +0.2 4,442,841 + BPHYT_RS19740 0.55 +0.2 4,442,841 + BPHYT_RS19740 0.55 -0.2 4,442,841 + BPHYT_RS19740 0.55 -1.8 4,442,841 + BPHYT_RS19740 0.55 -0.0 4,442,841 + BPHYT_RS19740 0.55 +0.5 4,442,842 - BPHYT_RS19740 0.55 -0.4 4,442,842 - BPHYT_RS19740 0.55 -0.8 4,442,985 + BPHYT_RS19740 0.81 -0.6 4,443,152 + -0.2 4,443,211 - +0.4 4,443,215 + +0.3 4,443,216 - +0.5 4,443,220 + +1.4 4,443,220 + +0.6 4,443,220 + -0.1 4,443,220 + +0.0 4,443,334 - -1.2 4,443,617 - -0.6 4,444,043 + +0.4 4,444,043 + -2.4 4,444,044 - +1.7 4,444,044 - +2.9 4,444,044 - +0.2
Or see this region's nucleotide sequence