Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10215

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10210 and BPHYT_RS10215 are separated by 88 nucleotidesBPHYT_RS10215 and BPHYT_RS10220 are separated by 166 nucleotidesBPHYT_RS10220 and BPHYT_RS10225 are separated by 62 nucleotidesBPHYT_RS10225 and BPHYT_RS10230 are separated by 264 nucleotides BPHYT_RS10210: BPHYT_RS10210 - LysR family transcriptional regulator, at 2,325,496 to 2,326,395 _RS10210 BPHYT_RS10215: BPHYT_RS10215 - sulfate transporter, at 2,326,484 to 2,326,954 _RS10215 BPHYT_RS10220: BPHYT_RS10220 - hypothetical protein, at 2,327,121 to 2,327,330 _RS10220 BPHYT_RS10225: BPHYT_RS10225 - GYD family protein, at 2,327,393 to 2,327,686 _RS10225 BPHYT_RS10230: BPHYT_RS10230 - hypothetical protein, at 2,327,951 to 2,328,382 _RS10230 Position (kb) 2326 2327Strain fitness (log2 ratio) -2 -1 0 1at 2325.591 kb on - strand, within BPHYT_RS10210at 2326.696 kb on + strand, within BPHYT_RS10215at 2327.247 kb on - strand, within BPHYT_RS10220

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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2,325,591 - BPHYT_RS10210 0.11 +0.8
2,326,696 + BPHYT_RS10215 0.45 -2.3
2,327,247 - BPHYT_RS10220 0.60 -0.2

Or see this region's nucleotide sequence