Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03315 and BPHYT_RS03320 are separated by 87 nucleotides BPHYT_RS03320 and BPHYT_RS03325 are separated by 25 nucleotides BPHYT_RS03325 and BPHYT_RS03330 are separated by 79 nucleotides BPHYT_RS03330 and BPHYT_RS03335 are separated by 44 nucleotides BPHYT_RS03335 and BPHYT_RS03340 are separated by 40 nucleotides
BPHYT_RS03315: BPHYT_RS03315 - polymerase, at 747,186 to 748,307
_RS03315
BPHYT_RS03320: BPHYT_RS03320 - lactoylglutathione lyase, at 748,395 to 748,781
_RS03320
BPHYT_RS03325: BPHYT_RS03325 - hypothetical protein, at 748,807 to 749,205
_RS03325
BPHYT_RS03330: BPHYT_RS03330 - hypothetical protein, at 749,285 to 750,187
_RS03330
BPHYT_RS03335: BPHYT_RS03335 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 750,232 to 750,990
_RS03335
BPHYT_RS03340: BPHYT_RS03340 - D,D-heptose 1,7-bisphosphate phosphatase, at 751,031 to 751,585
_RS03340
Position (kb) 749
750
751 Strain fitness (log2 ratio) -2
-1
0
1 at 748.290 kb on - strand at 748.290 kb on - strand at 748.373 kb on - strand at 748.452 kb on + strand, within BPHYT_RS03320 at 748.505 kb on + strand, within BPHYT_RS03320 at 748.591 kb on - strand, within BPHYT_RS03320 at 748.749 kb on + strand at 748.780 kb on - strand at 748.813 kb on - strand at 749.057 kb on - strand, within BPHYT_RS03325 at 749.089 kb on + strand, within BPHYT_RS03325 at 749.130 kb on + strand, within BPHYT_RS03325 at 749.265 kb on + strand at 749.565 kb on + strand, within BPHYT_RS03330 at 749.964 kb on + strand, within BPHYT_RS03330 at 749.965 kb on - strand, within BPHYT_RS03330 at 750.172 kb on + strand at 750.208 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 748,290 - -0.5 748,290 - +0.2 748,373 - -0.9 748,452 + BPHYT_RS03320 0.15 -0.1 748,505 + BPHYT_RS03320 0.28 -0.8 748,591 - BPHYT_RS03320 0.51 -0.7 748,749 + +1.0 748,780 - +1.6 748,813 - -0.3 749,057 - BPHYT_RS03325 0.63 +0.9 749,089 + BPHYT_RS03325 0.71 +0.7 749,130 + BPHYT_RS03325 0.81 -2.2 749,265 + -1.0 749,565 + BPHYT_RS03330 0.31 -1.2 749,964 + BPHYT_RS03330 0.75 -0.7 749,965 - BPHYT_RS03330 0.75 +0.3 750,172 + +0.1 750,208 + +0.3
Or see this region's nucleotide sequence