Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02325 and BPHYT_RS02330 are separated by 281 nucleotides BPHYT_RS02330 and BPHYT_RS02335 are separated by 128 nucleotides
BPHYT_RS02325: BPHYT_RS02325 - hypothetical protein, at 532,651 to 533,958
_RS02325
BPHYT_RS02330: BPHYT_RS02330 - IclR family transcriptional regulator, at 534,240 to 535,142
_RS02330
BPHYT_RS02335: BPHYT_RS02335 - fumarylacetoacetate hydrolase, at 535,271 to 536,254
_RS02335
Position (kb) 534
535
536 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 533.322 kb on - strand, within BPHYT_RS02325 at 533.369 kb on + strand, within BPHYT_RS02325 at 533.370 kb on - strand, within BPHYT_RS02325 at 533.427 kb on - strand, within BPHYT_RS02325 at 533.427 kb on - strand, within BPHYT_RS02325 at 533.745 kb on + strand, within BPHYT_RS02325 at 533.746 kb on - strand, within BPHYT_RS02325 at 533.746 kb on - strand, within BPHYT_RS02325 at 534.048 kb on + strand at 534.049 kb on - strand at 534.065 kb on - strand at 534.263 kb on + strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.265 kb on + strand at 534.266 kb on - strand at 534.277 kb on + strand at 534.277 kb on + strand at 534.278 kb on - strand at 534.335 kb on + strand, within BPHYT_RS02330 at 534.586 kb on + strand, within BPHYT_RS02330 at 534.587 kb on - strand, within BPHYT_RS02330 at 534.895 kb on + strand, within BPHYT_RS02330 at 534.896 kb on - strand, within BPHYT_RS02330 at 535.178 kb on + strand at 535.178 kb on + strand at 535.179 kb on - strand at 535.179 kb on - strand at 535.179 kb on - strand at 535.227 kb on + strand at 535.227 kb on + strand at 535.228 kb on - strand at 535.233 kb on - strand at 535.233 kb on - strand at 535.252 kb on + strand at 535.532 kb on + strand, within BPHYT_RS02335 at 535.532 kb on + strand, within BPHYT_RS02335 at 535.532 kb on + strand, within BPHYT_RS02335 at 535.554 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.654 kb on - strand, within BPHYT_RS02335 at 535.654 kb on - strand, within BPHYT_RS02335 at 535.654 kb on - strand, within BPHYT_RS02335 at 536.094 kb on - strand, within BPHYT_RS02335
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 533,322 - BPHYT_RS02325 0.51 +0.4 533,369 + BPHYT_RS02325 0.55 +2.8 533,370 - BPHYT_RS02325 0.55 -0.1 533,427 - BPHYT_RS02325 0.59 -0.7 533,427 - BPHYT_RS02325 0.59 +0.1 533,745 + BPHYT_RS02325 0.84 +0.1 533,746 - BPHYT_RS02325 0.84 -0.2 533,746 - BPHYT_RS02325 0.84 +0.2 534,048 + -0.2 534,049 - -0.3 534,065 - -0.1 534,263 + +0.3 534,264 - -0.2 534,264 - +0.1 534,264 - -0.4 534,265 + +0.7 534,266 - -0.9 534,277 + -0.5 534,277 + +0.2 534,278 - +0.2 534,335 + BPHYT_RS02330 0.11 -2.1 534,586 + BPHYT_RS02330 0.38 -0.3 534,587 - BPHYT_RS02330 0.38 -0.9 534,895 + BPHYT_RS02330 0.73 +0.5 534,896 - BPHYT_RS02330 0.73 -0.7 535,178 + -0.4 535,178 + +0.4 535,179 - +1.1 535,179 - +1.2 535,179 - -0.2 535,227 + -1.0 535,227 + +0.8 535,228 - -0.3 535,233 - +1.1 535,233 - -0.2 535,252 + +0.0 535,532 + BPHYT_RS02335 0.27 -0.3 535,532 + BPHYT_RS02335 0.27 -1.0 535,532 + BPHYT_RS02335 0.27 -0.1 535,554 + BPHYT_RS02335 0.29 -0.2 535,653 + BPHYT_RS02335 0.39 +0.4 535,653 + BPHYT_RS02335 0.39 -0.3 535,653 + BPHYT_RS02335 0.39 -0.2 535,653 + BPHYT_RS02335 0.39 +0.0 535,654 - BPHYT_RS02335 0.39 -0.8 535,654 - BPHYT_RS02335 0.39 -0.2 535,654 - BPHYT_RS02335 0.39 -0.7 536,094 - BPHYT_RS02335 0.84 -0.7
Or see this region's nucleotide sequence