Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01530

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS01525 and BPHYT_RS01530 are separated by 10 nucleotidesBPHYT_RS01530 and BPHYT_RS01535 are separated by 142 nucleotidesBPHYT_RS01535 and BPHYT_RS01540 overlap by 4 nucleotides BPHYT_RS01525: BPHYT_RS01525 - cell wall shape-determining protein, at 346,137 to 347,285 _RS01525 BPHYT_RS01530: BPHYT_RS01530 - penicillin-binding protein 2, at 347,296 to 349,611 _RS01530 BPHYT_RS01535: BPHYT_RS01535 - rod shape-determining protein MreD, at 349,754 to 350,266 _RS01535 BPHYT_RS01540: BPHYT_RS01540 - rod shape-determining protein MreC, at 350,263 to 351,372 _RS01540 Position (kb) 347 348 349 350Strain fitness (log2 ratio) -1 0 1at 347.735 kb on - strand, within BPHYT_RS01530at 348.966 kb on - strand, within BPHYT_RS01530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
347,735 - BPHYT_RS01530 0.19 -0.4
348,966 - BPHYT_RS01530 0.72 -1.1

Or see this region's nucleotide sequence