Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00745 and BPHYT_RS00750 overlap by 4 nucleotides BPHYT_RS00750 and BPHYT_RS00755 are separated by 526 nucleotides BPHYT_RS00755 and BPHYT_RS00760 overlap by 8 nucleotides BPHYT_RS00760 and BPHYT_RS00765 overlap by 4 nucleotides
BPHYT_RS00745: BPHYT_RS00745 - transcriptional regulator, at 171,763 to 172,167
_RS00745
BPHYT_RS00750: BPHYT_RS00750 - SpoVT/AbrB domain-containing protein, at 172,164 to 172,436
_RS00750
BPHYT_RS00755: BPHYT_RS00755 - cobyric acid synthase CobQ, at 172,963 to 173,835
_RS00755
BPHYT_RS00760: BPHYT_RS00760 - hypothetical protein, at 173,828 to 174,412
_RS00760
BPHYT_RS00765: BPHYT_RS00765 - lytic transglycosylase, at 174,409 to 175,086
_RS00765
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2 at 172.158 kb on - strand at 172.171 kb on - strand at 172.171 kb on - strand at 172.171 kb on - strand at 172.171 kb on - strand at 172.318 kb on + strand, within BPHYT_RS00750 at 172.319 kb on - strand, within BPHYT_RS00750 at 172.482 kb on + strand at 172.504 kb on + strand at 172.505 kb on - strand at 172.505 kb on - strand at 172.507 kb on + strand at 172.508 kb on - strand at 172.508 kb on - strand at 172.508 kb on - strand at 172.508 kb on - strand at 172.695 kb on + strand at 172.695 kb on + strand at 172.696 kb on - strand at 172.703 kb on + strand at 172.754 kb on - strand at 172.754 kb on - strand at 172.830 kb on + strand at 172.830 kb on + strand at 172.830 kb on + strand at 173.069 kb on + strand, within BPHYT_RS00755 at 173.069 kb on + strand, within BPHYT_RS00755 at 173.069 kb on + strand, within BPHYT_RS00755 at 173.070 kb on - strand, within BPHYT_RS00755 at 173.070 kb on - strand, within BPHYT_RS00755 at 173.180 kb on + strand, within BPHYT_RS00755 at 173.372 kb on + strand, within BPHYT_RS00755 at 173.373 kb on - strand, within BPHYT_RS00755 at 173.446 kb on + strand, within BPHYT_RS00755 at 173.446 kb on + strand, within BPHYT_RS00755 at 173.447 kb on - strand, within BPHYT_RS00755 at 173.447 kb on - strand, within BPHYT_RS00755 at 173.643 kb on + strand, within BPHYT_RS00755 at 173.644 kb on - strand, within BPHYT_RS00755 at 174.023 kb on + strand, within BPHYT_RS00760 at 174.254 kb on + strand, within BPHYT_RS00760 at 174.254 kb on + strand, within BPHYT_RS00760 at 174.309 kb on - strand, within BPHYT_RS00760 at 174.336 kb on - strand, within BPHYT_RS00760 at 174.336 kb on - strand, within BPHYT_RS00760 at 174.515 kb on - strand, within BPHYT_RS00765 at 174.613 kb on + strand, within BPHYT_RS00765 at 174.614 kb on - strand, within BPHYT_RS00765 at 174.635 kb on + strand, within BPHYT_RS00765 at 174.806 kb on - strand, within BPHYT_RS00765 at 174.806 kb on - strand, within BPHYT_RS00765
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 172,158 - +0.1 172,171 - +0.6 172,171 - -0.9 172,171 - +0.1 172,171 - -0.4 172,318 + BPHYT_RS00750 0.56 -0.4 172,319 - BPHYT_RS00750 0.57 -1.5 172,482 + +0.5 172,504 + -0.5 172,505 - +2.3 172,505 - -0.4 172,507 + -0.9 172,508 - -1.7 172,508 - -0.5 172,508 - -0.5 172,508 - +1.5 172,695 + -0.2 172,695 + -0.9 172,696 - +1.0 172,703 + -0.4 172,754 - -0.7 172,754 - -1.5 172,830 + -0.0 172,830 + -0.5 172,830 + -0.1 173,069 + BPHYT_RS00755 0.12 +0.3 173,069 + BPHYT_RS00755 0.12 +0.2 173,069 + BPHYT_RS00755 0.12 -0.8 173,070 - BPHYT_RS00755 0.12 +0.9 173,070 - BPHYT_RS00755 0.12 +0.2 173,180 + BPHYT_RS00755 0.25 +1.8 173,372 + BPHYT_RS00755 0.47 -0.5 173,373 - BPHYT_RS00755 0.47 +0.5 173,446 + BPHYT_RS00755 0.55 +1.2 173,446 + BPHYT_RS00755 0.55 -0.1 173,447 - BPHYT_RS00755 0.55 -1.1 173,447 - BPHYT_RS00755 0.55 -0.0 173,643 + BPHYT_RS00755 0.78 -0.6 173,644 - BPHYT_RS00755 0.78 +0.3 174,023 + BPHYT_RS00760 0.33 -1.6 174,254 + BPHYT_RS00760 0.73 +0.5 174,254 + BPHYT_RS00760 0.73 -0.1 174,309 - BPHYT_RS00760 0.82 +1.4 174,336 - BPHYT_RS00760 0.87 -0.8 174,336 - BPHYT_RS00760 0.87 -2.0 174,515 - BPHYT_RS00765 0.16 -0.5 174,613 + BPHYT_RS00765 0.30 -0.1 174,614 - BPHYT_RS00765 0.30 -2.0 174,635 + BPHYT_RS00765 0.33 -0.8 174,806 - BPHYT_RS00765 0.59 +0.0 174,806 - BPHYT_RS00765 0.59 -0.6
Or see this region's nucleotide sequence