Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00735 and BPHYT_RS00740 overlap by 4 nucleotides BPHYT_RS00740 and BPHYT_RS00745 are separated by 290 nucleotides BPHYT_RS00745 and BPHYT_RS00750 overlap by 4 nucleotides BPHYT_RS00750 and BPHYT_RS00755 are separated by 526 nucleotides
BPHYT_RS00735: BPHYT_RS00735 - AlpA family transcriptional regulator, at 170,907 to 171,149
_RS00735
BPHYT_RS00740: BPHYT_RS00740 - hypothetical protein, at 171,146 to 171,472
_RS00740
BPHYT_RS00745: BPHYT_RS00745 - transcriptional regulator, at 171,763 to 172,167
_RS00745
BPHYT_RS00750: BPHYT_RS00750 - SpoVT/AbrB domain-containing protein, at 172,164 to 172,436
_RS00750
BPHYT_RS00755: BPHYT_RS00755 - cobyric acid synthase CobQ, at 172,963 to 173,835
_RS00755
Position (kb) 171
172
173 Strain fitness (log2 ratio) -1
0
1
2 at 170.764 kb on + strand at 170.765 kb on - strand at 170.925 kb on - strand at 170.925 kb on - strand at 170.991 kb on + strand, within BPHYT_RS00735 at 170.992 kb on - strand, within BPHYT_RS00735 at 170.999 kb on + strand, within BPHYT_RS00735 at 171.000 kb on - strand, within BPHYT_RS00735 at 171.000 kb on - strand, within BPHYT_RS00735 at 171.299 kb on + strand, within BPHYT_RS00740 at 171.299 kb on + strand, within BPHYT_RS00740 at 171.300 kb on - strand, within BPHYT_RS00740 at 171.300 kb on - strand, within BPHYT_RS00740 at 171.529 kb on + strand at 171.530 kb on - strand at 171.530 kb on - strand at 171.533 kb on + strand at 171.533 kb on + strand at 171.664 kb on - strand at 172.158 kb on - strand at 172.171 kb on - strand at 172.171 kb on - strand at 172.171 kb on - strand at 172.171 kb on - strand at 172.318 kb on + strand, within BPHYT_RS00750 at 172.319 kb on - strand, within BPHYT_RS00750 at 172.482 kb on + strand at 172.504 kb on + strand at 172.505 kb on - strand at 172.505 kb on - strand at 172.507 kb on + strand at 172.508 kb on - strand at 172.508 kb on - strand at 172.508 kb on - strand at 172.508 kb on - strand at 172.695 kb on + strand at 172.695 kb on + strand at 172.696 kb on - strand at 172.703 kb on + strand at 172.754 kb on - strand at 172.754 kb on - strand at 172.830 kb on + strand at 172.830 kb on + strand at 172.830 kb on + strand at 173.069 kb on + strand, within BPHYT_RS00755 at 173.069 kb on + strand, within BPHYT_RS00755 at 173.069 kb on + strand, within BPHYT_RS00755 at 173.070 kb on - strand, within BPHYT_RS00755 at 173.070 kb on - strand, within BPHYT_RS00755
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 170,764 + +0.5 170,765 - +0.2 170,925 - -0.3 170,925 - -0.6 170,991 + BPHYT_RS00735 0.35 +0.7 170,992 - BPHYT_RS00735 0.35 +0.3 170,999 + BPHYT_RS00735 0.38 +0.8 171,000 - BPHYT_RS00735 0.38 -0.2 171,000 - BPHYT_RS00735 0.38 +0.5 171,299 + BPHYT_RS00740 0.47 -0.8 171,299 + BPHYT_RS00740 0.47 -1.1 171,300 - BPHYT_RS00740 0.47 -0.0 171,300 - BPHYT_RS00740 0.47 -0.2 171,529 + +1.5 171,530 - -0.6 171,530 - -0.1 171,533 + +0.8 171,533 + -0.4 171,664 - -0.6 172,158 - +0.1 172,171 - +0.6 172,171 - -0.9 172,171 - +0.1 172,171 - -0.4 172,318 + BPHYT_RS00750 0.56 -0.4 172,319 - BPHYT_RS00750 0.57 -1.5 172,482 + +0.5 172,504 + -0.5 172,505 - +2.3 172,505 - -0.4 172,507 + -0.9 172,508 - -1.7 172,508 - -0.5 172,508 - -0.5 172,508 - +1.5 172,695 + -0.2 172,695 + -0.9 172,696 - +1.0 172,703 + -0.4 172,754 - -0.7 172,754 - -1.5 172,830 + -0.0 172,830 + -0.5 172,830 + -0.1 173,069 + BPHYT_RS00755 0.12 +0.3 173,069 + BPHYT_RS00755 0.12 +0.2 173,069 + BPHYT_RS00755 0.12 -0.8 173,070 - BPHYT_RS00755 0.12 +0.9 173,070 - BPHYT_RS00755 0.12 +0.2
Or see this region's nucleotide sequence