Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00630 and BPHYT_RS00635 overlap by 4 nucleotides BPHYT_RS00635 and BPHYT_RS00640 are separated by 55 nucleotides BPHYT_RS00640 and BPHYT_RS00645 are separated by 25 nucleotides
BPHYT_RS00630: BPHYT_RS00630 - 3-oxoacyl-ACP synthase, at 149,904 to 150,965
_RS00630
BPHYT_RS00635: BPHYT_RS00635 - acetyltransferase, at 150,962 to 151,540
_RS00635
BPHYT_RS00640: BPHYT_RS00640 - acyl-CoA dehydrogenase, at 151,596 to 152,684
_RS00640
BPHYT_RS00645: BPHYT_RS00645 - diaminopimelate decarboxylase, at 152,710 to 153,918
_RS00645
Position (kb) 151
152
153 Strain fitness (log2 ratio) -1
0
1
2 at 150.617 kb on + strand, within BPHYT_RS00630 at 150.617 kb on + strand, within BPHYT_RS00630 at 150.617 kb on + strand, within BPHYT_RS00630 at 150.617 kb on + strand, within BPHYT_RS00630 at 150.617 kb on + strand, within BPHYT_RS00630 at 150.618 kb on - strand, within BPHYT_RS00630 at 150.823 kb on + strand, within BPHYT_RS00630 at 150.920 kb on + strand at 150.921 kb on - strand at 151.020 kb on + strand, within BPHYT_RS00635 at 151.021 kb on - strand, within BPHYT_RS00635 at 151.021 kb on - strand, within BPHYT_RS00635 at 151.118 kb on + strand, within BPHYT_RS00635 at 151.119 kb on - strand, within BPHYT_RS00635 at 151.119 kb on - strand at 151.591 kb on - strand at 151.591 kb on - strand at 151.591 kb on - strand at 151.591 kb on - strand at 151.702 kb on + strand at 151.702 kb on + strand at 151.703 kb on - strand at 151.783 kb on - strand, within BPHYT_RS00640 at 151.833 kb on + strand, within BPHYT_RS00640 at 151.833 kb on + strand at 151.833 kb on + strand, within BPHYT_RS00640 at 151.834 kb on - strand, within BPHYT_RS00640 at 151.933 kb on + strand, within BPHYT_RS00640 at 151.990 kb on + strand, within BPHYT_RS00640 at 151.990 kb on + strand, within BPHYT_RS00640 at 151.991 kb on - strand, within BPHYT_RS00640 at 152.070 kb on - strand, within BPHYT_RS00640 at 152.099 kb on - strand, within BPHYT_RS00640 at 152.099 kb on - strand, within BPHYT_RS00640 at 152.144 kb on - strand, within BPHYT_RS00640 at 152.166 kb on + strand, within BPHYT_RS00640 at 152.309 kb on - strand, within BPHYT_RS00640 at 152.309 kb on - strand, within BPHYT_RS00640 at 152.318 kb on + strand, within BPHYT_RS00640 at 152.319 kb on - strand, within BPHYT_RS00640 at 152.351 kb on - strand, within BPHYT_RS00640 at 152.650 kb on - strand at 152.650 kb on - strand at 152.880 kb on - strand, within BPHYT_RS00645 at 152.897 kb on - strand, within BPHYT_RS00645 at 152.897 kb on - strand, within BPHYT_RS00645 at 153.050 kb on + strand, within BPHYT_RS00645 at 153.050 kb on + strand, within BPHYT_RS00645 at 153.050 kb on + strand, within BPHYT_RS00645 at 153.050 kb on + strand, within BPHYT_RS00645 at 153.050 kb on + strand, within BPHYT_RS00645 at 153.050 kb on + strand, within BPHYT_RS00645 at 153.050 kb on + strand, within BPHYT_RS00645 at 153.051 kb on - strand, within BPHYT_RS00645 at 153.051 kb on - strand, within BPHYT_RS00645 at 153.068 kb on - strand, within BPHYT_RS00645 at 153.074 kb on + strand, within BPHYT_RS00645 at 153.075 kb on - strand, within BPHYT_RS00645 at 153.229 kb on + strand, within BPHYT_RS00645 at 153.229 kb on + strand, within BPHYT_RS00645 at 153.230 kb on - strand, within BPHYT_RS00645
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 150,617 + BPHYT_RS00630 0.67 -0.5 150,617 + BPHYT_RS00630 0.67 +2.0 150,617 + BPHYT_RS00630 0.67 -0.7 150,617 + BPHYT_RS00630 0.67 +0.9 150,617 + BPHYT_RS00630 0.67 -1.2 150,618 - BPHYT_RS00630 0.67 +0.5 150,823 + BPHYT_RS00630 0.87 +0.2 150,920 + -0.3 150,921 - +1.5 151,020 + BPHYT_RS00635 0.10 -0.5 151,021 - BPHYT_RS00635 0.10 +0.2 151,021 - BPHYT_RS00635 0.10 -0.3 151,118 + BPHYT_RS00635 0.27 +0.5 151,119 - BPHYT_RS00635 0.27 +0.2 151,119 - +1.5 151,591 - -0.8 151,591 - +0.6 151,591 - -0.3 151,591 - -0.1 151,702 + -0.5 151,702 + +0.1 151,703 - +0.1 151,783 - BPHYT_RS00640 0.17 -1.4 151,833 + BPHYT_RS00640 0.22 -1.0 151,833 + +1.5 151,833 + BPHYT_RS00640 0.22 +0.0 151,834 - BPHYT_RS00640 0.22 +0.5 151,933 + BPHYT_RS00640 0.31 -0.2 151,990 + BPHYT_RS00640 0.36 +1.1 151,990 + BPHYT_RS00640 0.36 +0.2 151,991 - BPHYT_RS00640 0.36 -0.2 152,070 - BPHYT_RS00640 0.44 -0.2 152,099 - BPHYT_RS00640 0.46 +0.1 152,099 - BPHYT_RS00640 0.46 -0.4 152,144 - BPHYT_RS00640 0.50 +0.9 152,166 + BPHYT_RS00640 0.52 +0.2 152,309 - BPHYT_RS00640 0.65 -1.0 152,309 - BPHYT_RS00640 0.65 -0.5 152,318 + BPHYT_RS00640 0.66 +0.4 152,319 - BPHYT_RS00640 0.66 -0.9 152,351 - BPHYT_RS00640 0.69 -0.0 152,650 - -0.9 152,650 - +0.0 152,880 - BPHYT_RS00645 0.14 +0.7 152,897 - BPHYT_RS00645 0.15 +0.2 152,897 - BPHYT_RS00645 0.15 -0.5 153,050 + BPHYT_RS00645 0.28 -0.2 153,050 + BPHYT_RS00645 0.28 -0.0 153,050 + BPHYT_RS00645 0.28 +0.4 153,050 + BPHYT_RS00645 0.28 -0.5 153,050 + BPHYT_RS00645 0.28 +0.7 153,050 + BPHYT_RS00645 0.28 +0.6 153,050 + BPHYT_RS00645 0.28 -0.0 153,051 - BPHYT_RS00645 0.28 +1.2 153,051 - BPHYT_RS00645 0.28 -0.4 153,068 - BPHYT_RS00645 0.30 +0.1 153,074 + BPHYT_RS00645 0.30 +2.1 153,075 - BPHYT_RS00645 0.30 -0.2 153,229 + BPHYT_RS00645 0.43 +0.2 153,229 + BPHYT_RS00645 0.43 -0.2 153,230 - BPHYT_RS00645 0.43 -0.5
Or see this region's nucleotide sequence