Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36290 and BPHYT_RS36295 are separated by 43 nucleotides BPHYT_RS36295 and BPHYT_RS36300 are separated by 576 nucleotides BPHYT_RS36300 and BPHYT_RS36305 overlap by 32 nucleotides
BPHYT_RS36290: BPHYT_RS36290 - hypothetical protein, at 71,492 to 72,151
_RS36290
BPHYT_RS36295: BPHYT_RS36295 - hypothetical protein, at 72,195 to 72,563
_RS36295
BPHYT_RS36300: BPHYT_RS36300 - hypothetical protein, at 73,140 to 73,421
_RS36300
BPHYT_RS36305: BPHYT_RS36305 - hypothetical protein, at 73,390 to 73,812
_RS36305
Position (kb) 72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 71.405 kb on - strand at 71.499 kb on - strand at 71.550 kb on + strand at 71.588 kb on + strand, within BPHYT_RS36290 at 71.589 kb on - strand, within BPHYT_RS36290 at 71.618 kb on - strand, within BPHYT_RS36290 at 71.618 kb on - strand, within BPHYT_RS36290 at 71.666 kb on - strand, within BPHYT_RS36290 at 71.666 kb on - strand, within BPHYT_RS36290 at 71.666 kb on - strand, within BPHYT_RS36290 at 71.811 kb on - strand, within BPHYT_RS36290 at 71.811 kb on - strand, within BPHYT_RS36290 at 71.868 kb on - strand, within BPHYT_RS36290 at 71.868 kb on - strand, within BPHYT_RS36290 at 71.870 kb on - strand, within BPHYT_RS36290 at 71.870 kb on - strand, within BPHYT_RS36290 at 71.870 kb on - strand, within BPHYT_RS36290 at 71.898 kb on - strand, within BPHYT_RS36290 at 71.898 kb on - strand, within BPHYT_RS36290 at 71.904 kb on - strand, within BPHYT_RS36290 at 71.904 kb on - strand, within BPHYT_RS36290 at 71.904 kb on - strand, within BPHYT_RS36290 at 71.910 kb on - strand, within BPHYT_RS36290 at 71.910 kb on - strand, within BPHYT_RS36290 at 71.910 kb on - strand, within BPHYT_RS36290 at 71.913 kb on - strand, within BPHYT_RS36290 at 71.943 kb on - strand, within BPHYT_RS36290 at 71.952 kb on - strand, within BPHYT_RS36290 at 71.952 kb on - strand, within BPHYT_RS36290 at 71.952 kb on - strand, within BPHYT_RS36290 at 71.952 kb on - strand, within BPHYT_RS36290 at 72.027 kb on - strand, within BPHYT_RS36290 at 72.114 kb on - strand at 72.114 kb on - strand at 72.114 kb on - strand at 72.114 kb on - strand at 72.123 kb on - strand at 72.126 kb on - strand at 72.126 kb on - strand at 72.126 kb on - strand at 72.126 kb on - strand at 72.170 kb on - strand at 72.170 kb on - strand at 72.223 kb on - strand at 72.256 kb on - strand, within BPHYT_RS36295 at 72.260 kb on - strand, within BPHYT_RS36295 at 72.260 kb on - strand, within BPHYT_RS36295 at 72.270 kb on - strand, within BPHYT_RS36295 at 72.270 kb on - strand, within BPHYT_RS36295 at 72.270 kb on - strand, within BPHYT_RS36295 at 72.270 kb on - strand at 72.270 kb on - strand, within BPHYT_RS36295 at 72.270 kb on - strand, within BPHYT_RS36295 at 72.274 kb on - strand, within BPHYT_RS36295 at 72.274 kb on - strand, within BPHYT_RS36295 at 72.350 kb on + strand, within BPHYT_RS36295 at 72.351 kb on - strand, within BPHYT_RS36295 at 72.352 kb on + strand, within BPHYT_RS36295 at 72.353 kb on - strand, within BPHYT_RS36295 at 72.353 kb on - strand, within BPHYT_RS36295 at 72.353 kb on - strand, within BPHYT_RS36295 at 72.445 kb on - strand at 72.462 kb on - strand, within BPHYT_RS36295 at 72.528 kb on - strand at 72.537 kb on - strand at 72.634 kb on + strand at 72.747 kb on - strand at 72.747 kb on - strand at 72.947 kb on - strand at 73.049 kb on - strand at 73.049 kb on - strand at 73.095 kb on - strand at 73.135 kb on - strand at 73.135 kb on - strand at 73.314 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.362 kb on - strand, within BPHYT_RS36300 at 73.420 kb on - strand at 73.452 kb on + strand, within BPHYT_RS36305 at 73.501 kb on + strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305 at 73.502 kb on - strand, within BPHYT_RS36305
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 71,405 - -1.6 71,499 - +0.1 71,550 + -0.2 71,588 + BPHYT_RS36290 0.15 -0.4 71,589 - BPHYT_RS36290 0.15 +0.1 71,618 - BPHYT_RS36290 0.19 +0.1 71,618 - BPHYT_RS36290 0.19 +1.4 71,666 - BPHYT_RS36290 0.26 +0.6 71,666 - BPHYT_RS36290 0.26 -0.0 71,666 - BPHYT_RS36290 0.26 +0.5 71,811 - BPHYT_RS36290 0.48 -0.1 71,811 - BPHYT_RS36290 0.48 +0.2 71,868 - BPHYT_RS36290 0.57 +2.8 71,868 - BPHYT_RS36290 0.57 +0.7 71,870 - BPHYT_RS36290 0.57 +0.8 71,870 - BPHYT_RS36290 0.57 +0.3 71,870 - BPHYT_RS36290 0.57 +0.9 71,898 - BPHYT_RS36290 0.62 -0.8 71,898 - BPHYT_RS36290 0.62 +0.3 71,904 - BPHYT_RS36290 0.62 -0.6 71,904 - BPHYT_RS36290 0.62 +0.5 71,904 - BPHYT_RS36290 0.62 +0.1 71,910 - BPHYT_RS36290 0.63 -0.5 71,910 - BPHYT_RS36290 0.63 +0.3 71,910 - BPHYT_RS36290 0.63 +0.3 71,913 - BPHYT_RS36290 0.64 +0.5 71,943 - BPHYT_RS36290 0.68 +0.2 71,952 - BPHYT_RS36290 0.70 -0.8 71,952 - BPHYT_RS36290 0.70 +0.1 71,952 - BPHYT_RS36290 0.70 -0.2 71,952 - BPHYT_RS36290 0.70 +0.2 72,027 - BPHYT_RS36290 0.81 +0.4 72,114 - -2.9 72,114 - -0.8 72,114 - -0.1 72,114 - +0.8 72,123 - +0.9 72,126 - +0.5 72,126 - +0.6 72,126 - +0.5 72,126 - +0.7 72,170 - +0.5 72,170 - +0.3 72,223 - +0.6 72,256 - BPHYT_RS36295 0.17 +0.7 72,260 - BPHYT_RS36295 0.18 -0.2 72,260 - BPHYT_RS36295 0.18 +1.6 72,270 - BPHYT_RS36295 0.20 +0.9 72,270 - BPHYT_RS36295 0.20 +0.3 72,270 - BPHYT_RS36295 0.20 +0.8 72,270 - +2.6 72,270 - BPHYT_RS36295 0.20 +0.0 72,270 - BPHYT_RS36295 0.20 +1.5 72,274 - BPHYT_RS36295 0.21 +0.5 72,274 - BPHYT_RS36295 0.21 +0.5 72,350 + BPHYT_RS36295 0.42 -0.1 72,351 - BPHYT_RS36295 0.42 +0.5 72,352 + BPHYT_RS36295 0.43 +0.5 72,353 - BPHYT_RS36295 0.43 +0.3 72,353 - BPHYT_RS36295 0.43 +1.1 72,353 - BPHYT_RS36295 0.43 +0.4 72,445 - +0.1 72,462 - BPHYT_RS36295 0.72 +1.4 72,528 - +0.7 72,537 - +0.5 72,634 + -0.3 72,747 - -0.3 72,747 - +0.8 72,947 - +0.6 73,049 - +0.9 73,049 - +0.6 73,095 - -1.1 73,135 - -1.3 73,135 - -1.3 73,314 - BPHYT_RS36300 0.62 -0.8 73,362 - BPHYT_RS36300 0.79 -1.8 73,362 - BPHYT_RS36300 0.79 -2.2 73,362 - BPHYT_RS36300 0.79 -1.4 73,362 - BPHYT_RS36300 0.79 -2.1 73,362 - BPHYT_RS36300 0.79 -2.2 73,420 - +1.6 73,452 + BPHYT_RS36305 0.15 +0.3 73,501 + BPHYT_RS36305 0.26 +0.7 73,502 - BPHYT_RS36305 0.26 +0.6 73,502 - BPHYT_RS36305 0.26 +0.7 73,502 - BPHYT_RS36305 0.26 +0.7 73,502 - BPHYT_RS36305 0.26 -0.1 73,502 - BPHYT_RS36305 0.26 +0.1 73,502 - BPHYT_RS36305 0.26 +1.1 73,502 - BPHYT_RS36305 0.26 +0.5
Or see this region's nucleotide sequence