Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34650

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS34640 and BPHYT_RS34645 are separated by 108 nucleotidesBPHYT_RS34645 and BPHYT_RS34650 are separated by 97 nucleotidesBPHYT_RS34650 and BPHYT_RS34655 are separated by 13 nucleotides BPHYT_RS34640: BPHYT_RS34640 - TetR family transcriptional regulator, at 3,379,281 to 3,379,946 _RS34640 BPHYT_RS34645: BPHYT_RS34645 - hypothetical protein, at 3,380,055 to 3,380,705 _RS34645 BPHYT_RS34650: BPHYT_RS34650 - l-threonine 3-dehydrogenase, at 3,380,803 to 3,381,834 _RS34650 BPHYT_RS34655: BPHYT_RS34655 - 2-amino-3-ketobutyrate CoA ligase, at 3,381,848 to 3,383,047 _RS34655 Position (kb) 3380 3381 3382Strain fitness (log2 ratio) -2 -1 0 1at 3379.865 kb on - strand, within BPHYT_RS34640at 3379.948 kb on + strandat 3379.949 kb on - strandat 3380.019 kb on + strandat 3380.020 kb on - strandat 3380.020 kb on - strandat 3380.148 kb on - strand, within BPHYT_RS34645at 3380.148 kb on - strand, within BPHYT_RS34645at 3380.154 kb on - strand, within BPHYT_RS34645at 3380.247 kb on + strand, within BPHYT_RS34645at 3380.248 kb on - strand, within BPHYT_RS34645at 3380.635 kb on - strand, within BPHYT_RS34645at 3380.654 kb on + strandat 3380.800 kb on - strandat 3381.094 kb on - strand, within BPHYT_RS34650at 3381.094 kb on - strand, within BPHYT_RS34650at 3381.240 kb on - strand, within BPHYT_RS34650at 3381.642 kb on - strand, within BPHYT_RS34650at 3381.712 kb on - strand, within BPHYT_RS34650at 3381.853 kb on + strandat 3381.854 kb on - strandat 3382.236 kb on + strand, within BPHYT_RS34655at 3382.780 kb on + strand, within BPHYT_RS34655

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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3,379,865 - BPHYT_RS34640 0.88 +0.5
3,379,948 + -1.0
3,379,949 - -0.9
3,380,019 + -1.9
3,380,020 - +0.4
3,380,020 - +1.3
3,380,148 - BPHYT_RS34645 0.14 -0.3
3,380,148 - BPHYT_RS34645 0.14 -0.0
3,380,154 - BPHYT_RS34645 0.15 -0.0
3,380,247 + BPHYT_RS34645 0.29 +0.3
3,380,248 - BPHYT_RS34645 0.30 +0.8
3,380,635 - BPHYT_RS34645 0.89 -0.2
3,380,654 + -0.5
3,380,800 - +1.0
3,381,094 - BPHYT_RS34650 0.28 -1.7
3,381,094 - BPHYT_RS34650 0.28 +0.7
3,381,240 - BPHYT_RS34650 0.42 -1.3
3,381,642 - BPHYT_RS34650 0.81 -0.3
3,381,712 - BPHYT_RS34650 0.88 -0.7
3,381,853 + -1.0
3,381,854 - +0.2
3,382,236 + BPHYT_RS34655 0.32 +0.1
3,382,780 + BPHYT_RS34655 0.78 -1.5

Or see this region's nucleotide sequence