Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19320 and BPHYT_RS19325 are separated by 63 nucleotides BPHYT_RS19325 and BPHYT_RS19330 are separated by 81 nucleotides BPHYT_RS19330 and BPHYT_RS19335 are separated by 139 nucleotides
BPHYT_RS19320: BPHYT_RS19320 - glycine cleavage system protein T, at 4,338,307 to 4,339,425
_RS19320
BPHYT_RS19325: BPHYT_RS19325 - glycine cleavage system H protein, at 4,339,489 to 4,339,869
_RS19325
BPHYT_RS19330: BPHYT_RS19330 - glycine cleavage system P protein (EC 1.4.4.2) <small>(from data)</small>, at 4,339,951 to 4,342,887
_RS19330
BPHYT_RS19335: BPHYT_RS19335 - hypothetical protein, at 4,343,027 to 4,344,157
_RS19335
Position (kb) 4339
4340
4341
4342
4343 Strain fitness (log2 ratio) -2
-1
0
1 at 4339.445 kb on + strand at 4339.457 kb on + strand at 4339.457 kb on + strand at 4339.477 kb on + strand at 4339.478 kb on - strand at 4339.513 kb on + strand at 4339.693 kb on - strand, within BPHYT_RS19325 at 4339.696 kb on + strand, within BPHYT_RS19325 at 4339.696 kb on + strand, within BPHYT_RS19325 at 4339.696 kb on + strand, within BPHYT_RS19325 at 4339.846 kb on + strand at 4339.846 kb on + strand at 4339.846 kb on + strand at 4339.878 kb on + strand at 4339.878 kb on + strand at 4339.879 kb on - strand at 4339.885 kb on - strand at 4340.261 kb on - strand, within BPHYT_RS19330 at 4340.338 kb on + strand, within BPHYT_RS19330 at 4340.796 kb on + strand, within BPHYT_RS19330 at 4341.031 kb on + strand, within BPHYT_RS19330 at 4341.031 kb on + strand, within BPHYT_RS19330 at 4341.031 kb on + strand, within BPHYT_RS19330 at 4341.031 kb on + strand, within BPHYT_RS19330 at 4341.032 kb on - strand, within BPHYT_RS19330 at 4341.032 kb on - strand, within BPHYT_RS19330 at 4341.032 kb on - strand, within BPHYT_RS19330 at 4341.219 kb on + strand, within BPHYT_RS19330 at 4341.579 kb on + strand, within BPHYT_RS19330 at 4342.039 kb on + strand, within BPHYT_RS19330 at 4342.039 kb on + strand, within BPHYT_RS19330 at 4342.039 kb on + strand, within BPHYT_RS19330 at 4342.040 kb on - strand, within BPHYT_RS19330 at 4342.229 kb on - strand, within BPHYT_RS19330 at 4342.309 kb on + strand, within BPHYT_RS19330 at 4342.309 kb on + strand, within BPHYT_RS19330 at 4342.309 kb on + strand, within BPHYT_RS19330 at 4342.310 kb on - strand, within BPHYT_RS19330 at 4342.414 kb on + strand, within BPHYT_RS19330 at 4342.522 kb on + strand, within BPHYT_RS19330 at 4342.523 kb on - strand, within BPHYT_RS19330 at 4342.801 kb on + strand at 4342.879 kb on + strand at 4342.879 kb on + strand at 4343.444 kb on + strand, within BPHYT_RS19335 at 4343.445 kb on - strand, within BPHYT_RS19335 at 4343.445 kb on - strand, within BPHYT_RS19335 at 4343.795 kb on + strand, within BPHYT_RS19335 at 4343.795 kb on + strand, within BPHYT_RS19335 at 4343.796 kb on - strand, within BPHYT_RS19335
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 4,339,445 + -1.3 4,339,457 + -0.4 4,339,457 + -0.7 4,339,477 + +0.2 4,339,478 - -1.4 4,339,513 + -0.8 4,339,693 - BPHYT_RS19325 0.54 -1.2 4,339,696 + BPHYT_RS19325 0.54 -1.2 4,339,696 + BPHYT_RS19325 0.54 -0.7 4,339,696 + BPHYT_RS19325 0.54 -0.6 4,339,846 + -0.5 4,339,846 + +0.1 4,339,846 + +0.4 4,339,878 + -1.8 4,339,878 + +0.8 4,339,879 - -2.0 4,339,885 - -1.3 4,340,261 - BPHYT_RS19330 0.11 -0.0 4,340,338 + BPHYT_RS19330 0.13 -0.6 4,340,796 + BPHYT_RS19330 0.29 -0.8 4,341,031 + BPHYT_RS19330 0.37 -1.4 4,341,031 + BPHYT_RS19330 0.37 -1.3 4,341,031 + BPHYT_RS19330 0.37 -0.9 4,341,031 + BPHYT_RS19330 0.37 -0.9 4,341,032 - BPHYT_RS19330 0.37 -0.6 4,341,032 - BPHYT_RS19330 0.37 -1.2 4,341,032 - BPHYT_RS19330 0.37 -1.4 4,341,219 + BPHYT_RS19330 0.43 -0.5 4,341,579 + BPHYT_RS19330 0.55 -1.6 4,342,039 + BPHYT_RS19330 0.71 -1.9 4,342,039 + BPHYT_RS19330 0.71 -1.6 4,342,039 + BPHYT_RS19330 0.71 -1.8 4,342,040 - BPHYT_RS19330 0.71 -2.6 4,342,229 - BPHYT_RS19330 0.78 -1.5 4,342,309 + BPHYT_RS19330 0.80 +0.2 4,342,309 + BPHYT_RS19330 0.80 -0.9 4,342,309 + BPHYT_RS19330 0.80 +0.6 4,342,310 - BPHYT_RS19330 0.80 -2.3 4,342,414 + BPHYT_RS19330 0.84 -0.9 4,342,522 + BPHYT_RS19330 0.88 -0.8 4,342,523 - BPHYT_RS19330 0.88 -1.3 4,342,801 + +1.0 4,342,879 + -0.2 4,342,879 + -0.3 4,343,444 + BPHYT_RS19335 0.37 +0.2 4,343,445 - BPHYT_RS19335 0.37 -0.6 4,343,445 - BPHYT_RS19335 0.37 -2.4 4,343,795 + BPHYT_RS19335 0.68 -1.4 4,343,795 + BPHYT_RS19335 0.68 -0.6 4,343,796 - BPHYT_RS19335 0.68 -1.6
Or see this region's nucleotide sequence